LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g03052	ATGTGGCGCGCCCGATGTTTTCCCTCCCAAAGGAGTGGGAGTGTGCAGAGCAGAGAAGCATGGTTCACGGAGAACAACATCGCTGATCCAGATTACTTCCGGAAGCCACTGGTCTCCTTTCTCGAACGCCACCATTCCGACCAGATCCACTCCATTGTTTCTTCTCCCGATTCCGACCTTCACTTCCCTCTTTTCGTCGATTTTGCAGAACTGTTTGATGAGGAAACTCACGTTGCTTGTCTCCTCTTTGTTCAACCCAATACCTATTTGCGAGTATTCGACGCGGCTGCCATTTCGGCCCAGCAAGCCGTATTGGCGGATGGTAAGAAAGGGGTGGAGAAAAAGTCCATTCATGTTCGTATTAATACCTGTGGCTCATTCCTTGAATTCCCTGAAACTTTTCCAAGCATTGGACGTGTTCGCGTGGAGCACCATGGAATTCTTCTCACTCTCAAAGGGATAGTGATTAGGTCTGGAGCAATCAAGATGCATGAAGGGGAGAGGACGTACATGTGTCACAAATGCAAAAACAGCTTCCCAGTACATCCTTTGGTGGAAGCTCGAAACTCCATATCATTACCTTCAATTTGTCCAATTCGGCAGAACTCCAAGCCCTGTGCAGGCACGAAATTCCAGTATGTAGAGAATACTATAGTATGCCATGATTATCAGGAGATAAAAATTCAAGAAAGTACACAGGTGCTAGGTGTTGGGGCAATTCCTCGTTCAATTCTTGTCATCCTAGAGGATGACCTCGTTGATGTTGTTAAAGCTGGAGATGATGTGATTGTCTCTGGTGTCTTAACATCAAAATGGGCTCCAGAGTTGAAGGATGTGCGTTGTGACCTTGATCCTGTATTAATTGCCAACAATGTAAGGAGAGTCAATGAACTGAAATCAGAAATTGAAGTTTTTGACGATATTGTTATGAAATTCAAGCAGTTTTGGGCTCACTTCAAAGGTTCACCTCTAAAAGGGAGGAATGCTATTCTGCGAGGAATTTGCCCGCAAGTATTTGGCCTTTTCACTGTTAAGTTGGCTGTTGCATTAACTCTTATTGGAGGCGTGCAACATGTCGATGCTTCTGGAACCAGGATAAGAGGGGAGTCCCACTTACTCTTGGTTGGTGATCCTGGCACTGGAAAATCTCAGTTTCTGAAATTTGCTGCAAAATTGAGCAACCGCTCTGTTATTACCACTGGATTGGGAAGCACAAGTGCTGGATTGACTGTTACTGCAGTGAAGGATGGAGGGGAATGGATGTTGGAAGCTGGAGCTCTTGTTTTGGCAGATGGAGGATTGTGTTGCATAGATGAATTTGATAGTATGAGGGAGCATGATAGAGCAACAATACATGAAGCCATGGAGCAGCAGACAATAAGTGTTGCCAAGGCTGGTCTTGTAACAACACTCAGCACTAGAACAACTGTATTTGGTGCTACAAATCCCAAGGGACAGTATGATCCTGATCAACCTCTGTCTGTCAATACAACACTCTCTGGTCCTTTATTAAGCAGGTTCGATATTGTCCTTGTTCTATTGGATACAAAAAATCCTGATTGGGATGCAGTGGTTTCATCTCATATTCTTTCTGAGGCAGAATCGGGTAGCACCACTAATGACGAAGATCTGGTAAATAGCTGGCCACTTGCTACACTCAAGAGGTACATACACTATGTGAAAGAACATTTCAGACCAGTCCTAACAAGAGAGGCTGAAATAATTATATCCAGCTATTATCAACTTCAAAGGAAATCTGCAACTGATAATGCAGCTAGAACAACTGTCCGCATGTTGGAAAGTTTGATACGCCTAGCACAAGCCCATGCAAGATTGATGTTCAGAAATGAGGTGACAAGACTAGATGCCATAACAGCTATTTTATGCATAGAATCATCCATGACTACCTCAGCTATCGTAGATTGCATTGGGAATGCTTTGCATTCCAATTTTGCTGACAACCCTGATCAGGAATATGCGAAGCAAGAAATATTGATCCGACAAAAATTGAATAGTGTGGAGAGTGAAGACTAA	2034	0.4376	MWRARCFPSQRSGSVQSREAWFTENNIADPDYFRKPLVSFLERHHSDQIHSIVSSPDSDLHFPLFVDFAELFDEETHVACLLFVQPNTYLRVFDAAAISAQQAVLADGKKGVEKKSIHVRINTCGSFLEFPETFPSIGRVRVEHHGILLTLKGIVIRSGAIKMHEGERTYMCHKCKNSFPVHPLVEARNSISLPSICPIRQNSKPCAGTKFQYVENTIVCHDYQEIKIQESTQVLGVGAIPRSILVILEDDLVDVVKAGDDVIVSGVLTSKWAPELKDVRCDLDPVLIANNVRRVNELKSEIEVFDDIVMKFKQFWAHFKGSPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTRIRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGQYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPDWDAVVSSHILSEAESGSTTNDEDLVNSWPLATLKRYIHYVKEHFRPVLTREAEIIISSYYQLQRKSATDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDCIGNALHSNFADNPDQEYAKQEILIRQKLNSVESED	677

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g03052	677	SMART	mcm	133	635	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Viun6g03052	677	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	425	439	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Viun6g03052	677	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	503	511	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Viun6g03052	677	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	367	382	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Viun6g03052	677	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	453	466	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Viun6g03052	677	Pfam	MCM OB domain	139	269	IPR033762	-
	Viun6g03052	677	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	336	643	IPR027417	-
	Viun6g03052	677	SUPERFAMILY	Nucleic acid-binding proteins	43	276	IPR012340	-
	Viun6g03052	677	ProSiteProfiles	MCM family domain profile.	326	529	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Viun6g03052	677	Gene3D	-	311	639	IPR027417	-
	Viun6g03052	677	FunFam	Probable DNA helicase MCM9	304	638	-	-
	Viun6g03052	677	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	39	652	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Viun6g03052	677	SMART	AAA_5	368	517	IPR003593	GO:0016887
	Viun6g03052	677	Gene3D	-	140	269	IPR012340	-
	Viun6g03052	677	Pfam	MCM AAA-lid domain	552	633	IPR041562	-
	Viun6g03052	677	Gene3D	-	164	221	-	-
	Viun6g03052	677	Pfam	MCM P-loop domain	328	531	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Viun6g03052	677	CDD	MCM9	329	633	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g03052	Viun-Chr6	33104680	33112776	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g03052	37	658	Core DNA Replication Machinery Family	AT2G14050	74.522	0.0	958

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g03052	K10738		-	gmx:100776255	1093.95