Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03041 ATGGGTCTGCGTCATCTCACAAACTTGATGACGCCATTGCCAGAACTCTGTGCCTCACTATGTCATGTGAGGAAGTCCGAGCCTTGTTCATCAGATTGCAAGGTTTGCATCAGGATCTGCCTCACCAATCCCGAAAACCCTAATTATGATTCTCCTCCTGCGCCGCCGCCGCCACCGCCACCGCCACAACTTCCCCCTTTCAATCTATATAACGATGGCGCAGATGAATCAAGCAGCCACAGAATAGCCACCTATTTGTTCCTTGCTCTTGCTATTCTAACCGTTGCTTTCTTTGTCGTTTGTTGTCGCACCATCTATACCAGGTTCAGCTCGAGGAGGAGGGAATCATCGAGGCACCAGCCAGAGAACACCGGAGGCAATGATTTTGTTGATGAAGAGCATGGAGCTGTGGTGGATCACCCCATATGGTATATCCGCACCCTTGGCCTTCAGCAATCGATTATCAATGCCATCACAGTTTGTAGGTATAAGAAAGGAGAGGGCTTGATTGAAGGAACCGAGTGTGCGGTTTGCTTGAGTGAGTTTGAAGAGGATGAGAATCTCAGACTTTTGCCTAAATGCTATCATGCTTTTCATTTACCTTGTATTGATACCTGGCTTAGGTCTCATACCAATTGTCCCATATGCCGGGCTCCCATTGTTTCCGACCTTGCAACTGCTAGGTTGGACTCTAGTTTTCTTGATTCAAATTCCTCTGGACATACCCATGTGGAAATTTTGGAAAATAGTGCTCCTGGTTCTGAATTAGGGAATAGGGCAGAGGAAGAGAGCCAAATGGAGGCTGAAGATGGATTTAGGGTTTGTGAAACTGAAACCCCAGTTGAAGAGGTGCCAGACATTCTTCCTAGAAGATCTGTTTCTCTGGATTCCTTCTCTGTTGCAAATATCAATCGTGCTCTTGCAACAGTGGGATCTAATGCTAACTCAAAAAGAGTGCTTGGAAGCGTGGATGATGATGCTGTTTCTTCTTCTTCTTCAAAGGTGGGTTCTGGAAGCGATTTGGCAACAACTTCCAAAGGAAGCTCTTCTTTCAGGTTAACTAGGTATCTGCAGGGTGCTTCTAGTTCTTCAATGAAAAGGTCACAGTCCTACAATGGAAAGTACCTTCTGTCTTGGTACGGTCGCAATCAGAAGAAGCCAAATGCTCCTCTGAGAAGCTTTTAG 1185 0.4616 MGLRHLTNLMTPLPELCASLCHVRKSEPCSSDCKVCIRICLTNPENPNYDSPPAPPPPPPPPQLPPFNLYNDGADESSSHRIATYLFLALAILTVAFFVVCCRTIYTRFSSRRRESSRHQPENTGGNDFVDEEHGAVVDHPIWYIRTLGLQQSIINAITVCRYKKGEGLIEGTECAVCLSEFEEDENLRLLPKCYHAFHLPCIDTWLRSHTNCPICRAPIVSDLATARLDSSFLDSNSSGHTHVEILENSAPGSELGNRAEEESQMEAEDGFRVCETETPVEEVPDILPRRSVSLDSFSVANINRALATVGSNANSKRVLGSVDDDAVSSSSSKVGSGSDLATTSKGSSSFRLTRYLQGASSSSMKRSQSYNGKYLLSWYGRNQKKPNAPLRSF 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03041 394 MobiDBLite consensus disorder prediction 324 346 - -
Viun6g03041 394 SMART ring_2 175 216 IPR001841 -
Viun6g03041 394 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 75 223 IPR044675 -
Viun6g03041 394 MobiDBLite consensus disorder prediction 48 70 - -
Viun6g03041 394 SUPERFAMILY RING/U-box 169 224 - -
Viun6g03041 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 224 IPR013083 -
Viun6g03041 394 ProSiteProfiles Zinc finger RING-type profile. 175 217 IPR001841 -
Viun6g03041 394 FunFam RING-H2 finger protein ATL54 150 223 - -
Viun6g03041 394 Pfam Ring finger domain 174 217 IPR001841 -
Viun6g03041 394 MobiDBLite consensus disorder prediction 48 67 - -
Viun6g03041 394 CDD RING-H2_EL5-like 174 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03041 Viun-Chr6 33058594 33060126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03041 82 221 C3H Transcription Factor Family AT1G72220 56.338 4.04e-47 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03041 - - vun:114186636 746.117