Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03040 ATGTCTCAGTCAGACAGCAAGAAGAAGAAGGAGCGCAGCAGCAGCAAGAAGGAAGAGGAGCAAGCAGGTAAAGATGAGGGGTTGATGATAAAGCCTCAGAGCTTCACTCCCCCCATCGACACCTCTCAATGGCCCATCCTCCTCAAAAACTACGATCGCCTCAACGTCCGCACCGGCCACTACACCCCCATCCCCTCCGGTTACTCCCCCCTCAAACGCCCCCTCCCCGAATACCTCAAATACGGCGTCATCAACCTCGACAAGCCCGCCAACCCTTCCTCCCATGAGGTCGTCGCCTGGATCAAGCGCCTCCTCCGCGTCGAGAAGACCGGCCACTCCGGTACCCTCGACCCCAAGGTCACCGGCAACCTCATCGTCTGTATCGACCGCGCCACTCGCCTCGTCAAGTCCCAGCAGGGTGCCGGCAAGGAATACGTCTGTATCGCCCGCCTCCACTCCGCCGTCCCTGACGTCGCCAAGGTTGGACGCGCCCTCGAGACCCTCACCGGCGCCGTCTTCCAGCGTCCCCCCTTGATCTCCGCCGTCAAACGCCAGCTCCGCATCCGGACCATCTACGAAAGTAAGCTCCTTGAGTATGACCCTGATAGGCACTTAGTTGTTTTCTGGATTTCCTGTGAGGCTGGGACGTATGTTAGGACTATGTGTGTTCATTTGGGGTTGCTTCTTGGCGTGGGTGGCCATATGCAAGAGCTTAGGAGGGTTCGCTCTGGGATCATGGGGGAGAAGGATAACATGGTGAGCATGCATGATGTCATGGATGCTCAGTGGGTTTATGATAATTTTAGGGATGAGAGTTATTTGAGGAGGGCTGTTATGCCCTTGGAGATTCTTTTGACTAGCTATAAGAGGCTGGTTGTTAAGGACTCTGCTGTGAATGCCATTTGCTATGGTGCTAAGTTGATGATTCCTGGGTTGCTTAGGTTTGAGAATGATATTGATGTTGGGGAGGAGGTTGTGCTTATGACCACCAAGGGTGAGGCTATTGCTCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCCACTTGTGATCATGGGGTTGTGGCCAAGATCAAGAGGGTTGTCATGGATAGGGATACTTATCCAAGGAAATGGGGTTTGGGACCTAGAGCTTCCATGAAGAAGAAGCTTATTTCTGAAGGGAAGTTGGATAAGCATGGGAAGCCCAATGAGAAGACTCCCCAGGAGTGGCTTAGGAATCTTGTTTTGCCCACCGGTGGGGATAGTATGATTGCTGGTATGGCTGCTGCGCCTGAACCTGAGGATGAGAAGGTCAAGAAGGATGCAGATGGTGAAGGACGGAAGAGGAAGAAACATGAAAGCACTGATAGCCCAGTTTCGGTCCCTGCCAAGAAGGCGAAAGTGGATGTAGAAGAGGTGAAGAAGGTAGCTGATGAGGCTGTGGAGGTTGAAGTTGACAAGAAAGAGAAGAAGAAGAAAAAGAAGGATAAGGATAGCAGTGAAGTAGCCTCTGCGGATGAGGAGAAAACGGAGAAGAAGAAGAAGCACAAGGATAAGGCTGAAGACGCTTCGCCGGAGTTAGACAAGTCTGAGAAGAAAAAGAAGAAAAAGAAAGACAAAGAAGCTGCTGCTGCTGCTGCAGAAATTAGCAATGGAAAGGAGGATGACGGTAATGCTGATAAGAGTGAAAAGAAGAAGCATAAGAAAAAGAAAAACAAAGATGCCGAGGAAGAATAG 1719 0.5131 MSQSDSKKKKERSSSKKEEEQAGKDEGLMIKPQSFTPPIDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLPEYLKYGVINLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVGRALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGGHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNFRDESYLRRAVMPLEILLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASMKKKLISEGKLDKHGKPNEKTPQEWLRNLVLPTGGDSMIAGMAAAPEPEDEKVKKDADGEGRKRKKHESTDSPVSVPAKKAKVDVEEVKKVADEAVEVEVDKKEKKKKKKDKDSSEVASADEEKTEKKKKHKDKAEDASPELDKSEKKKKKKKDKEAAAAAAEISNGKEDDGNADKSEKKKHKKKKNKDAEEE 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03040 572 CDD PseudoU_synth_hDyskerin 80 262 - -
Viun6g03040 572 CDD PUA_Cbf5 287 361 - -
Viun6g03040 572 Pfam TruB family pseudouridylate synthase (N terminal domain) 102 218 IPR002501 GO:0006396
Viun6g03040 572 Coils Coil 552 572 - -
Viun6g03040 572 Gene3D Pseudouridine synthase 74 280 - -
Viun6g03040 572 SMART pua_5 289 363 IPR002478 GO:0003723
Viun6g03040 572 SUPERFAMILY PUA domain-like 288 369 IPR015947 -
Viun6g03040 572 SUPERFAMILY Pseudouridine synthase 41 286 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Viun6g03040 572 Pfam PUA domain 289 361 IPR002478 GO:0003723
Viun6g03040 572 Pfam DKCLD (NUC011) domain 41 98 IPR012960 -
Viun6g03040 572 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 48 373 IPR004802 GO:0006396
Viun6g03040 572 MobiDBLite consensus disorder prediction 1 26 - -
Viun6g03040 572 Gene3D PUA domain 41 372 IPR036974 GO:0003723
Viun6g03040 572 MobiDBLite consensus disorder prediction 459 538 - -
Viun6g03040 572 ProSiteProfiles PUA domain profile. 288 363 - -
Viun6g03040 572 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 5 558 IPR004802 GO:0006396
Viun6g03040 572 NCBIfam uncharacterized domain 2 284 360 IPR004521 GO:0003723
Viun6g03040 572 MobiDBLite consensus disorder prediction 426 452 - -
Viun6g03040 572 FunFam H/ACA ribonucleoprotein complex subunit CBF5 74 280 - -
Viun6g03040 572 MobiDBLite consensus disorder prediction 415 572 - -
Viun6g03040 572 Pfam tRNA pseudouridylate synthase B C-terminal domain 219 285 IPR032819 -
Viun6g03040 572 MobiDBLite consensus disorder prediction 1 35 - -
Viun6g03040 572 SMART DKCLD_2 40 98 IPR012960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03040 Viun-Chr6 33055730 33057702 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03040 4 461 NAC Transcription Factor Family AT3G57150 84.199 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03040 K11131 - gmx:100806355 864.759