Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03021 ATGGCGAGAAAGAAGATACCGATCAAGAAGATCGACAACATAAACGCGAGGCAAGTAACATTCTCAAAGAGGAGAAAAGGTCTTTTCAAGAAGGCTCAGGAACTGTCAACTCTTTGTGATGCTCAGATTGCTCTCATAGTCTTTTCCGCAACCAGCAAGCTCTTCGAGTACGCCACTTCAAGCATGCAACAAATACTTGAAAGGCGTAATCGGCATTCAGGTGTTCAAGGATCAGACATTTCATCTACTGGACAACAACAGCTTGGAAGTGAGTCTTTTGACATGCTGCGCAAGGTTGTAGAAGATAAGACTCATGAACTGAGTCAGTTGAATGGACAAGACTTGCAAGGATTGACAATACAAGAATTGCAGAAACTGGAGGAACTTCTCCAAAGACGTTGGACCACTATTTCAAAAATTAAGGAAGAAAAAATGACACAAGAGATCAACAGCCTTAAAACAAAGCCTGTTGGCGATTTTTTCATGAATCTTTATTCACTCAACCTTTTTCTGCAATGA 519 0.4085 MARKKIPIKKIDNINARQVTFSKRRKGLFKKAQELSTLCDAQIALIVFSATSKLFEYATSSMQQILERRNRHSGVQGSDISSTGQQQLGSESFDMLRKVVEDKTHELSQLNGQDLQGLTIQELQKLEELLQRRWTTISKIKEEKMTQEINSLKTKPVGDFFMNLYSLNLFLQ 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03021 172 ProSiteProfiles K-box domain profile. 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun6g03021 172 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Viun6g03021 172 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677|GO:0046983
Viun6g03021 172 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Viun6g03021 172 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 139 - -
Viun6g03021 172 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun6g03021 172 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Viun6g03021 172 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun6g03021 172 FunFam Transcription factor, MADS-box 13 84 - -
Viun6g03021 172 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun6g03021 172 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun6g03021 172 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun6g03021 172 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun6g03021 172 Pfam K-box region 85 155 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03021 Viun-Chr6 32939322 32951072 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03021 1 155 MADS-box Gene Family AT2G22540 50.641 5.69e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun6g03021 K-box 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03021 - - vum:124831154 246.128