Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03019 ATGGCGAGAAAGAAGATACCGATCAAGAAGATCGACAACATAAACGCGAGGCAAGTAACATTCTCAAAGAGGAGAAAAGGTCTTTTCAAGAAGGCTCAGGAACTGTCAACTCTTTGTGATGCTCAGATTGCTCTCATAGTCTTTTCCGCAACCAGCAAGCTCTTCGAGTACGCCACTTCAAGCATGCAACAAATACTTGAAAGGCGTAATCGGCATTCAGGTGTTCAAGGATCAGACATTTCATCTACTGGACAACAACAGCTTGGAAGTGAGTCTTTTGACATGCTGCGCAAGGTTGTAGAAGATAAGACTCATGAACTGAGTCAGTTGAATGGACAAGACTTGCAAGGATTGACAATACAAGAATTGCAGAAACTGGAGGAACTTCTCCAAAGACGTTGGACCACTATTTCAAAAATTAAGGAAGAAAAAATGACACAAGAGATCAACAGCCTTAAAACAAAGGAGGCCGAACTTACAGAAGAGAACCAGAAACTGAAGCAGAATTTTTATGAACAGAAGTTGGTTCGAGAACAAAGGCAGTGTTATGAGTCAATTACTAGCAGTTCATCTGATTTTCCTGCAGACAATGGTAGTTCTGATACATCTCTCAAGTTGGGGCTGCGTTTATTTGAATGA 639 0.4116 MARKKIPIKKIDNINARQVTFSKRRKGLFKKAQELSTLCDAQIALIVFSATSKLFEYATSSMQQILERRNRHSGVQGSDISSTGQQQLGSESFDMLRKVVEDKTHELSQLNGQDLQGLTIQELQKLEELLQRRWTTISKIKEEKMTQEINSLKTKEAELTEENQKLKQNFYEQKLVREQRQCYESITSSSSDFPADNGSSDTSLKLGLRLFE 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03019 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun6g03019 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun6g03019 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun6g03019 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Viun6g03019 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Viun6g03019 212 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Viun6g03019 212 ProSiteProfiles K-box domain profile. 86 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun6g03019 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun6g03019 212 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Viun6g03019 212 FunFam Transcription factor, MADS-box 13 82 - -
Viun6g03019 212 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun6g03019 212 Coils Coil 142 169 - -
Viun6g03019 212 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Viun6g03019 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun6g03019 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03019 Viun-Chr6 32938681 32951072 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03019 1 208 MADS-box Gene Family AT2G22540 44.492 2.06e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun6g03019 K-box 1.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03019 - - gmx:100779453 297.36