LGRPv2

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g03016	ATGGCGAGAAAGAAGATACCGATCAAGAAGATCGACAACATAAACGCGAGGCAAGTAACATTCTCAAAGAGGAGAAAAGGTCTTTTCAAGAAGGCTCAGGAACTGTCAACTCTTTGTGATGCTCAGATTGCTCTCATAGTCTTTTCCGCAACCAGCAAGCTCTTCGAGTACGCCACTTCAAGCATGCAACAAATACTTGAAAGGCGTAATCGGCATTCAGGTGTTCAAGGATCAGACATTTCATCTACTGGACAACAACAGCTTGGAAGTGAGTCTTTTGACATGCTGCGCAAGGTTGTAGAAGATAAGACTCATGAACTGAGTCAGTTGAATGGACAAGACTTGCAAGGATTGACAATACAAGAATTGCAGAAACTGGAGGAACTTCTCCAAAGACGTTGGACCACTATTTCAAAAATTAAGGAAGAAAAAATGACACAAGAGATCAACAGCCTTAAAACAAAGGAGGCCGAACTTACAGAAGAGAACCAGAAACTGAAGCAGAATTTTTATGAACAGAAGTTGGTTCGAGAACAAAGGCAGTGTTATGAGTCAATTACTAGCAGTTCATCTGATTTTCCTGCAGACAATGGTAGTTCTGATACATCTCTCAAGTTGGGGCTGCGTTTATTTGAATGA	639	0.4116	MARKKIPIKKIDNINARQVTFSKRRKGLFKKAQELSTLCDAQIALIVFSATSKLFEYATSSMQQILERRNRHSGVQGSDISSTGQQQLGSESFDMLRKVVEDKTHELSQLNGQDLQGLTIQELQKLEELLQRRWTTISKIKEEKMTQEINSLKTKEAELTEENQKLKQNFYEQKLVREQRQCYESITSSSSDFPADNGSSDTSLKLGLRLFE	212

Showing 1 to 1 of 1 entries

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Viun6g03016	212	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
Viun6g03016	212	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
Viun6g03016	212	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
Viun6g03016	212	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
Viun6g03016	212	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	164	-	-
Viun6g03016	212	CDD	MADS_MEF2_like	2	78	IPR033896	GO:0000977\|GO:0045944
Viun6g03016	212	ProSiteProfiles	K-box domain profile.	86	181	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
Viun6g03016	212	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
Viun6g03016	212	Gene3D	-	13	82	IPR036879	GO:0003677\|GO:0046983
Viun6g03016	212	FunFam	Transcription factor, MADS-box	13	82	-	-

Showing 1 to 10 of 15 entries

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g03016	Viun-Chr6	32938681	32951072	Dispersed/Tandem

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g03016	1	208	MADS-box Gene Family	AT2G22540	44.492	2.06e-55	174

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Viun6g03016		K-box	1.9e-12	No_clan

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g03016	-		-	gmx:100779453	297.36

Showing 1 to 1 of 1 entries