Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03015 ATGCCCATGTCTTCCCTTCGTCTTCTTTCTTTCGAGACAAACACAGTTGAAACTTGTTCACTCTCAGAAGCAATAGGGCACAATTTTCTGGTGTTCTTGATTTTGACGAAAATGGTGAGAAAGAAGATACCGATCAAGAAAATAGTGGATGTAACGGCGAGGCAGGTGACATTCTCGAAGAGGAAGAGTGGGCTTCTGAAGAAGGCACGTGAGCTTTCTCTTCTCTGCGATGCTGAGATTGCTCTCATAGTCTTTTCACCTGCTGGCAAACTCTTCGACTATGCAAGTTCAAGTATGCAGAAAATAACTGAAAGATATATTTTATGTTCAGAGTTGAACCTTGACAAACTAGACCAGTCACATCCTACGGATCAGATTACAAGTAATTATACTTCTTTGAAGAAGCAAGTGGAAGACAGGAGTCGTGAAATGAGACAACTGAATGGAGAAGAATTGCAAGGATTGAGCCTAAAGGAACTGCAGAAATTAGAAGAACGACTTGGTTCATCCTTGGACCGTGTTTATAAAGCCAAGGTTCAAAATTTTATAGCAGAGATCAGTATTCTTACGCACAAGGGAAACAAACTCAAGGAAGATAACCGACTCATAAAACAGAGGATAACGAATGTAGAAGACCAATCCTTTGACACCTCCCTCACATTGGGACTACCTTTTCCTTCTGGCTCAAAATAG 693 0.4098 MPMSSLRLLSFETNTVETCSLSEAIGHNFLVFLILTKMVRKKIPIKKIVDVTARQVTFSKRKSGLLKKARELSLLCDAEIALIVFSPAGKLFDYASSSMQKITERYILCSELNLDKLDQSHPTDQITSNYTSLKKQVEDRSREMRQLNGEELQGLSLKELQKLEERLGSSLDRVYKAKVQNFIAEISILTHKGNKLKEDNRLIKQRITNVEDQSFDTSLTLGLPFPSGSK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03015 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 47 94 IPR002100 GO:0003677|GO:0046983
Viun6g03015 230 ProSiteProfiles K-box domain profile. 123 213 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun6g03015 230 CDD MADS_MEF2_like 40 111 IPR033896 GO:0000977|GO:0045944
Viun6g03015 230 SMART madsneu2 38 97 IPR002100 GO:0003677|GO:0046983
Viun6g03015 230 PRINTS MADS domain signature 60 75 IPR002100 GO:0003677|GO:0046983
Viun6g03015 230 PRINTS MADS domain signature 40 60 IPR002100 GO:0003677|GO:0046983
Viun6g03015 230 PRINTS MADS domain signature 75 96 IPR002100 GO:0003677|GO:0046983
Viun6g03015 230 Coils Coil 130 150 - -
Viun6g03015 230 Gene3D - 50 112 IPR036879 GO:0003677|GO:0046983
Viun6g03015 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 40 177 - -
Viun6g03015 230 Pfam K-box region 120 207 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun6g03015 230 ProSiteProfiles MADS-box domain profile. 38 98 IPR002100 GO:0003677|GO:0046983
Viun6g03015 230 SUPERFAMILY SRF-like 40 116 IPR036879 GO:0003677|GO:0046983
Viun6g03015 230 ProSitePatterns MADS-box domain signature. 40 94 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03015 Viun-Chr6 32930864 32936096 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03015 38 214 MADS-box Gene Family AT2G22540 48.045 4.00e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun6g03015 K-box 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03015 - - vra:106774983 346.665