Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g03013 ATGCCCATGTCTTCCCTTCGTCTTCTTTCTTTCGAGACAAACACAGAAGCAATAGGGCACAATTTTCTGGTGTTCTTGATTTTGACGAAAATGGTGAGAAAGAAGATACCGATCAAGAAAATAGTGGATGTAACGGCGAGGCAGGTGACATTCTCGAAGAGGAAGAGTGGGCTTCTGAAGAAGGCACGTGAGCTTTCTCTTCTCTGCGATGCTGAGATTGCTCTCATAGTCTTTTCACCTGCTGGCAAACTCTTCGACTATGCAAGTTCAAGTATGCAGAAAATAACTGAAAGATATATTTTATGTTCAGAGTTGAACCTTGACAAACTAGACCAGTCACATCCTACGGATCAGATTACAAGTAATTATACTTCTTTGAAGAAGCAAGTGGAAGACAGGAGTCGTGAAATGAGACAACTGAATGGAGAAGAATTGCAAGGATTGAGCCTAAAGGAACTGCAGAAATTAGAAGAACGACTTGGTTCATCCTTGGACCGTGTTTATAAAGCCAAGGTTCAAAATTTTATAGCAGAGATCAGTATTCTTACGCACAAGGGAAACAAACTCAAGGAAGATAACCGACTCATAAAACAGAGGATAACGAATGTAGAAGACCAATCCTTTGACACCTCCCTCACATTGGGACTACCTTTTCCTTCTGGCTCAAAATAG 672 0.4107 MPMSSLRLLSFETNTEAIGHNFLVFLILTKMVRKKIPIKKIVDVTARQVTFSKRKSGLLKKARELSLLCDAEIALIVFSPAGKLFDYASSSMQKITERYILCSELNLDKLDQSHPTDQITSNYTSLKKQVEDRSREMRQLNGEELQGLSLKELQKLEERLGSSLDRVYKAKVQNFIAEISILTHKGNKLKEDNRLIKQRITNVEDQSFDTSLTLGLPFPSGSK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g03013 223 Pfam K-box region 113 200 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun6g03013 223 Coils Coil 123 143 - -
Viun6g03013 223 ProSitePatterns MADS-box domain signature. 33 87 IPR002100 GO:0003677|GO:0046983
Viun6g03013 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 33 170 - -
Viun6g03013 223 ProSiteProfiles MADS-box domain profile. 31 91 IPR002100 GO:0003677|GO:0046983
Viun6g03013 223 SMART madsneu2 31 90 IPR002100 GO:0003677|GO:0046983
Viun6g03013 223 SUPERFAMILY SRF-like 33 109 IPR036879 GO:0003677|GO:0046983
Viun6g03013 223 PRINTS MADS domain signature 33 53 IPR002100 GO:0003677|GO:0046983
Viun6g03013 223 PRINTS MADS domain signature 53 68 IPR002100 GO:0003677|GO:0046983
Viun6g03013 223 PRINTS MADS domain signature 68 89 IPR002100 GO:0003677|GO:0046983
Viun6g03013 223 ProSiteProfiles K-box domain profile. 116 206 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun6g03013 223 Gene3D - 43 105 IPR036879 GO:0003677|GO:0046983
Viun6g03013 223 CDD MADS_MEF2_like 33 104 IPR033896 GO:0000977|GO:0045944
Viun6g03013 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 40 87 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g03013 Viun-Chr6 32930864 32936123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g03013 31 207 MADS-box Gene Family AT2G22540 48.045 3.57e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun6g03013 K-box 1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g03013 - - vra:106774983 348.977