Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02992 ATGGCTCCTTCTTCCCATGTTGGTCTCCATGCAACAACAAACCATTTATTCTGTTATTCACAGGGAATCTTGTTCTTATTTCTTATGATGAGTTTTGCAAATCCACTTTCATTTCGTCACCATGGATTTCAGTATAATGATACCAAGATCGAAGGAGATGCTATTTTGTCACAGTCAGAAATCCAACTCACCAAAACCACCAGGTACCAGAGCAATGCTTACAGTGTTGGGAGAGTCACAAGTTTTCAAAGATTGCACCTTTGGGACAACATCACAGGAAAACTCACCGATTTCACTACGCAATTTTCCTTTCTCATTTTCTCAAATGAGACTAGTTTTGGAGATGGCTTGGCTTTTTTCTTGGCAGATCCAGAGCTTCCACTTTCAAATCAGATACAACAAGGAGGTGGTCTTGGTCTTCTGGATGGTAACCAGTTTCTGAATTCAACTAAACATCCATTTGTAGCAGTGGAGTTTGACACACACCAGAATTCATGGGATCCACCTGGGACTCATGTAGGTATAAATTTCAACTCTATGAAATCTAACAAAACTGTTCCATGGTACATTGATATTACGCAAATGAAAGCTTATTATTGTGTAATTGAGTACAATGCAACTACTCTTAATTTAAGTGTTTCTTTCACTGGAAACAAGCTCGGTCCCAAGCCAATGAAAAGATATATCTCATGCAATGTTGACCTGAGATATTACCTACCAGAGTGGGTTATATTTGGTTTCTCAGCTGCTACAGGAGTTATGTTTGAGTTGAACACACTGCAGTCATGGTCATTCCATTCAACTTTACAGAGTGATGAGAATGTGTCAAACAAGATACCTCCAATTGCAGTGTCACCAAGCCCTTCACCGTTTTCAACTGACACTATTAGCCCTAAACAAGAGGGGAACAAAGGTTTAATGATGGGACTAGAAGTTGGGGTAGGCATAGCTGCAACTTTCCTTATTTTAGGGTTGGTTTGTGTTTTAATGTGGAAGAAAAGGGGTAAAGGGAAAAAGGAAGATTCAACAATTCTTGATCTGAGCATGGATGATGAATTCCAAAAGGGAATTGGACCCAGAAGATTTTGCTATAAGGAGTTGGCAAGTGCAACAAAAAACTTCGCAGAGTCACAGAAGATTGGACAGGGTGGTTTTGGTGGTGTGTACAAAGGCTATTTGAAAGAACTGAACACCAACGTTGCTATAAAGAGGATATCAAGAGAATCTAGGCAAGGAGCGAAGGAATATGCAAGTGAAGTTAAGATCATAAGCCAACTAAGGCACAGGAATTTAGTGCAATTAATTGGCTGGTGCCACATGAAGAAAGATCTCCTTCTTATATACGAGTTCATGCAAAATGGTAGCTTAGATTCCCACCTATATCGTGGGAAAAGCATCTTGACATGCGAGATGAGGTACAACATAGCCATGGACTTGGCTCTGGCAGTGTTGTACCTTCATGAAGAATGGGAGCAGTGTGTGCTTCACAGGGACATTAAATCAAGCAACATTATGTTGGATTCAAATTTCAACGCTAAGCTTGGGGATTTTGGCTTAGCTAGGTTTGTTGATCATGAGAAAGGGTCCCAAACTACAATTCTAGCAGGGACAAGAGGGTACATAGCCCCTGAATACTTCACTACAGGGAAGGCTAGGAAGGAATCTGATATATACAGTGTTGGGGTTGTTTTTCTGGAGTTAGCCACCGGAAGAAAACCGGTTGATCTCAATGCCATGGAAGGTCAAATAACCATATTTGAGTGGGTTTGGGAGCTTCATAAATTGGGAAAGTTACTTGAAGTGGTAGACAAAAAACTTGGAGGAGCATTTGATGAGGAACAAATGAAACATTTAGTGATTGTTGGCCTTTGGTGTGCCAATCCAGATCATACATCTAGACCCTCTGTGAGGCAATTGATTCAAGTGCTTAAGTTTGAAGCTCCTTTACCAGTTCTCCCACAAAAATTAGCTGAGCCATTTTATCATTCTCCAACTATGAGTACAATATTTGCTTCAATTTCTTCTCCCCTCTCCGGCCACATGTTAGAACCAAATACAATGTAA 2064 0.4041 MAPSSHVGLHATTNHLFCYSQGILFLFLMMSFANPLSFRHHGFQYNDTKIEGDAILSQSEIQLTKTTRYQSNAYSVGRVTSFQRLHLWDNITGKLTDFTTQFSFLIFSNETSFGDGLAFFLADPELPLSNQIQQGGGLGLLDGNQFLNSTKHPFVAVEFDTHQNSWDPPGTHVGINFNSMKSNKTVPWYIDITQMKAYYCVIEYNATTLNLSVSFTGNKLGPKPMKRYISCNVDLRYYLPEWVIFGFSAATGVMFELNTLQSWSFHSTLQSDENVSNKIPPIAVSPSPSPFSTDTISPKQEGNKGLMMGLEVGVGIAATFLILGLVCVLMWKKRGKGKKEDSTILDLSMDDEFQKGIGPRRFCYKELASATKNFAESQKIGQGGFGGVYKGYLKELNTNVAIKRISRESRQGAKEYASEVKIISQLRHRNLVQLIGWCHMKKDLLLIYEFMQNGSLDSHLYRGKSILTCEMRYNIAMDLALAVLYLHEEWEQCVLHRDIKSSNIMLDSNFNAKLGDFGLARFVDHEKGSQTTILAGTRGYIAPEYFTTGKARKESDIYSVGVVFLELATGRKPVDLNAMEGQITIFEWVWELHKLGKLLEVVDKKLGGAFDEEQMKHLVIVGLWCANPDHTSRPSVRQLIQVLKFEAPLPVLPQKLAEPFYHSPTMSTIFASISSPLSGHMLEPNTM 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02992 687 FunFam L-type lectin-domain containing receptor kinase IX.1 34 278 - -
Viun6g02992 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672|GO:0006468
Viun6g02992 687 PANTHER - 59 647 - -
Viun6g02992 687 ProSitePatterns Protein kinases ATP-binding region signature. 380 403 IPR017441 GO:0005524
Viun6g02992 687 FunFam L-type lectin-domain containing receptor kinase IX.1 359 450 - -
Viun6g02992 687 SUPERFAMILY Concanavalin A-like lectins/glucanases 35 273 IPR013320 -
Viun6g02992 687 Gene3D Phosphorylase Kinase; domain 1 359 450 - -
Viun6g02992 687 Gene3D Transferase(Phosphotransferase) domain 1 451 662 - -
Viun6g02992 687 Pfam Legume lectin domain 36 274 IPR001220 GO:0030246
Viun6g02992 687 ProSitePatterns Legume lectins alpha-chain signature. 239 248 IPR000985 -
Viun6g02992 687 Pfam Protein kinase domain 375 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02992 687 Gene3D - 34 281 - -
Viun6g02992 687 ProSitePatterns Legume lectins beta-chain signature. 155 161 IPR019825 -
Viun6g02992 687 ProSiteProfiles Protein kinase domain profile. 374 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02992 687 FunFam Lectin-domain containing receptor kinase A4.3 451 663 - -
Viun6g02992 687 CDD lectin_legume_LecRK_Arcelin_ConA 36 269 IPR001220 GO:0030246
Viun6g02992 687 SMART serkin_6 374 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02992 687 SUPERFAMILY Protein kinase-like (PK-like) 358 670 IPR011009 -
Viun6g02992 687 CDD STKc_IRAK 380 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02992 Viun-Chr6 32793066 32795215 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02992 23 662 Receptor kinase-like Gene Family AT5G10530 45.344 1.21e-171 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Viun6g02992 Pkinase 8.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02992 - - gmx:100814713 1088.94