LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g02986	ATGGCAACAGTTTCATTCCTCCCTCGTTCAAATACACTATCGTGTAGCTACCTCAAGTTTTGGGAGAATGATGCACGGTTGCAACTGCAAGGAGACGCAGAAGTTTTAGGTTCAGAAATCCAAGTCACATCTAACAGGGAAGGGAAAAACAACAGTTACAGTGTTGGACGTGTGACACCTCTTCTAACGATGCATCTCTGGGATAAGAGTTCTGGGAAACTTGCAGACTTCACTACTCACTTTTCGTTCTCTGTTTATTCAGATGGAGTTCATTTCGGAGATGGGTTGGCATTTTTCTTGGCGGATCCTGGGCTTCCCCTTTTGAATAACATCACAGAAGGGGGTGGTCTTGGCCTTGTGGATGGTGATCGAGTGTTGAACTCAACTCAGCAGTACTCATTTGTGGCAGTGGAGTTTGACACCTTCCAAAATTCATGGGATCCAGAAGACGCAGACCCTCATGTAGGTATGAATTTCAACTCTATGAAATCTAACAAAACTGCATCATGGTTTGCTGATATGTCACAAGACGTGGTTTATAATTGTAGCATTGAGTACAATTCCACCACTCTTAGTTTAACTGCTTCTTTCACTGGCTACAATTACGATAAATATGGTAAAATAGAAAACAGCCTTTCGTACCAAGTTGATTTGAGAAAGCACTTACCGGAGAGGGTTATGGTTGGTTTCTCCGCAGCTGCGGGATATTATTTCGAGGACCATATTCTGAAGTCATGGTCATTTTATAGTTCAGACCTAGAAATAGAAATTGGTCATGCTTCTGGTGATGATAATACAGTAGTTGAGTGGCTAGGAATTTGGATGGGTCTGGTGGTTTTCTTAGGATTGGTTTGTTTTGTGGTGTGGAGAAGGATTAAAGGGAAGAGAGAAGTCTTGGAACTTGATCTAAAAATGGACGATGAGTTCCAAAAGGGAATAGGACCCAAGAGGTTTCGTTACAACGAACTGGAAAGTGCAACAAGTAAATTTTCAGAGTCAGAGAAGCTTGGACAAGGTGGCTTCGGTGGCGTGTATAAAGGTTTTCTGAAGGATTTAAACTCCTACGTTGCAATCAAGAGGGTATCGAGAGAGTCAAAGCAAGGGGTTAAGGAATATGCTACTGAAGTTAAGGTCATTAGCCAGTTGAGGCACAAGAATCTGGTGCAACTCCTTGGTTGGTGCCATAGAGAAAAAGATCTCCTTCTTGTGTATGAATTCATGCCAAATGGAAGCTTAGATTTCCATTTATATGGGAACGGTTTCTTGACATGGCCAGTGAGGTATAACATAGCTCTAGGCTTGGCTTCGGCATTGCTATACCTGCAAGAAGAGTGGGAGCAGTGTGTTCTTCACAGGGACATAAAATCAAGCAACATAATGTTGGATTCAAGCTTCAACGCCAAGCTTGGTGATTTTGGTTTGGCTAGGTTGGTGGATCATGAAAAGGGGTCACAAACCACGTTTATAGCTGGGACAAGAGGGTACATTGCACCAGAATATGTGACCACAGGGAAAGCTTATAAGGAATCTGACATATACAGTTTTGGGGTTGTGCTATTGGAGATTGCTAGTGGAAGAAAACCCATTGATCTAAAGGCACAGGAGGGGAAAGTAACAATAGTAGAGTGGGTTTGGGAAATGTATGAATTGGGAGAGATTTTGAAAGTTGCAGATCCAAAACTGTGTGGAGCATTTGATGAGGAACAAATGAAAAGATTAGTGGGTATTGGTCTTTGGTGTGCTCATCCAAATTACAGATTGAGGCCTTCTGTGATGCAAGTTATCCAAATGCTTAAATTTGAAGCTGAATTGCCAGCTCTGCCAAAGTGGCTACCTGTGCAAAATTTTTATCCTTCAACAGTAAGAATAAATTTTTCATCGTCTTCGAACACTTTACCTATTACGCAGGAAATTTTGTAG	1920	0.4182	MATVSFLPRSNTLSCSYLKFWENDARLQLQGDAEVLGSEIQVTSNREGKNNSYSVGRVTPLLTMHLWDKSSGKLADFTTHFSFSVYSDGVHFGDGLAFFLADPGLPLLNNITEGGGLGLVDGDRVLNSTQQYSFVAVEFDTFQNSWDPEDADPHVGMNFNSMKSNKTASWFADMSQDVVYNCSIEYNSTTLSLTASFTGYNYDKYGKIENSLSYQVDLRKHLPERVMVGFSAAAGYYFEDHILKSWSFYSSDLEIEIGHASGDDNTVVEWLGIWMGLVVFLGLVCFVVWRRIKGKREVLELDLKMDDEFQKGIGPKRFRYNELESATSKFSESEKLGQGGFGGVYKGFLKDLNSYVAIKRVSRESKQGVKEYATEVKVISQLRHKNLVQLLGWCHREKDLLLVYEFMPNGSLDFHLYGNGFLTWPVRYNIALGLASALLYLQEEWEQCVLHRDIKSSNIMLDSSFNAKLGDFGLARLVDHEKGSQTTFIAGTRGYIAPEYVTTGKAYKESDIYSFGVVLLEIASGRKPIDLKAQEGKVTIVEWVWEMYELGEILKVADPKLCGAFDEEQMKRLVGIGLWCAHPNYRLRPSVMQVIQMLKFEAELPALPKWLPVQNFYPSTVRINFSSSSNTLPITQEIL	639

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g02986	639	Gene3D	-	11	258	-	-
	Viun6g02986	639	CDD	lectin_legume_LecRK_Arcelin_ConA	13	251	IPR001220	GO:0030246
	Viun6g02986	639	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	449	461	IPR008271	GO:0004672\|GO:0006468
	Viun6g02986	639	SUPERFAMILY	Concanavalin A-like lectins/glucanases	17	253	IPR013320	-
	Viun6g02986	639	FunFam	L-type lectin-domain containing receptor kinase IX.1	315	406	-	-
	Viun6g02986	639	PANTHER	-	49	602	-	-
	Viun6g02986	639	ProSiteProfiles	Protein kinase domain profile.	330	600	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun6g02986	639	SMART	serkin_6	330	600	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun6g02986	639	ProSitePatterns	Legume lectins beta-chain signature.	135	141	IPR019825	-
	Viun6g02986	639	Gene3D	Transferase(Phosphotransferase) domain 1	407	618	-	-
	Viun6g02986	639	SUPERFAMILY	Protein kinase-like (PK-like)	314	619	IPR011009	-
	Viun6g02986	639	Pfam	Protein kinase domain	331	596	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun6g02986	639	ProSitePatterns	Legume lectins alpha-chain signature.	222	231	IPR000985	-
	Viun6g02986	639	ProSitePatterns	Protein kinases ATP-binding region signature.	336	359	IPR017441	GO:0005524
	Viun6g02986	639	CDD	STKc_IRAK	336	599	-	-
	Viun6g02986	639	Gene3D	Phosphorylase Kinase; domain 1	315	406	-	-
	Viun6g02986	639	Pfam	Legume lectin domain	14	252	IPR001220	GO:0030246
	Viun6g02986	639	FunFam	Lectin-domain containing receptor kinase A4.3	407	618	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g02986	Viun-Chr6	32780949	32782868	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g02986	4	617	Receptor kinase-like Gene Family	AT5G10530	45.325	5.36e-174	508

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Viun6g02986		Pkinase	3.6e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g02986	-		-	gmx:100780181	783.867