Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02983 ATGGGGAGAGGGAAGATTGCGATTCGAAGGATCGATAACTCTACGAGCCGTCAAGTGACTTTCTCAAAGAGAAGAAATGGGTTGCTGAAGAAAGCCAGAGAATTATCGATTCTTTGCGATGCTGAAGTTGGATTGATGGTGTTTTCCAGCACCGGCAAGCTTTATGATTATGCAAGCACAAGCATGAAGTCCGTTTTTGAGCGCTACAACAAGCTAAAAGAGGAACATCATCACCTCATGAATCCGGCTTCAGAAGAAAAGTTTTGGCAGACAGAAGCAGCAAGCTTGAGGCAACAGCTTCAGTACTTGCAAGAATGCCACAGGCAACTAATGGGTGAAGAACTTACGGGTTTGGGTATCAAAGAACTACAAAATCTGGAAAACCAACTGGAGATGAGTCTAAAGGGTGTTCGTATGAAAAAGGATCAAATTTTAACAAGTGAGATTAAAGAACTGCGCCAAAAGGGAAATCTCATTCATCAGGACAATGTTGAACTCTATCAAAAAATGGACCAGATTCAAAAGGAAAATGCAGAGCTACAGAAGAAGGTTTACGGAAGCAGTACAGGTGAAGAAAATGTGGCATCCAGTCCTTCTTACATGGTCAGAAATGGATATGATTTACATGCACCAATCAGTCTCCAGCTAAGTCAGCCACAGACTCAATACAGTGAATCATCAGCCAAAGTAATGAAACTCGGATTGCAGCTGCATTAG 717 0.4212 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYASTSMKSVFERYNKLKEEHHHLMNPASEEKFWQTEAASLRQQLQYLQECHRQLMGEELTGLGIKELQNLENQLEMSLKGVRMKKDQILTSEIKELRQKGNLIHQDNVELYQKMDQIQKENAELQKKVYGSSTGEENVASSPSYMVRNGYDLHAPISLQLSQPQTQYSESSAKVMKLGLQLH 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02983 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun6g02983 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun6g02983 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun6g02983 238 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun6g02983 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Viun6g02983 238 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun6g02983 238 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Viun6g02983 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun6g02983 238 Coils Coil 120 140 - -
Viun6g02983 238 Coils Coil 163 183 - -
Viun6g02983 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun6g02983 238 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Viun6g02983 238 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Viun6g02983 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun6g02983 238 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Viun6g02983 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02983 Viun-Chr6 32760903 32772623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02983 1 227 MADS-box Gene Family AT2G22630 60.526 2.64e-93 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun6g02983 K-box 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02983 K09264 - gmx:100808145 424.476