Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02974 ATGGAGAATTATTCATACCAATCATACCCTGATTCTGGCGACTCCTCTCCACGCTCCAGAGAGATCGACTTTGATAACCCTCCTCCTCCATGGGACGAACAACAGCAACAACAGCAGAATTACAAGGTAAAGTTCATGTGCAGCTACGGCGGCAAGATCCACCCACGCTCCCACGACAACCAACTGTCATACGTCGGCGGCGAGACCAAGATCCTCGCCGTCGACCGCTCCATAAAGTTTGGAGCCCTGCTGGCCAAGCTCTCGGCCCTCTGCGAGGTGGCGCCGCAAGAAAGCAACGGCAGCAGCCTCACCTTCAAGTACCAGCTCCCGGGCGAAGACCTCGACGCTCTCATCTCCGTCACCAACGACGACGACCTCGACCACATGATGCACGAGTACGATCGCCTCTACCGCGCTTCCGCTAGACCCGCCCGCATGCGATTATTCCTCTTTCTCGCCGATACTCTTCCTTCTCCGCTTCCTGCTTCCGCACCGCTCCAACCTGTGATTAAACCAAATAACGTCGATTTCCTCTTCGGTCTCGAGAAGGGCGCCGGTGTCGCCGTCGCGGCTCAGCCGGCTCAGATTCCGCCTGCGGCAGTCAAATTTCATGATCCGGTGCCGGAGCCCGTCGCGCCACCGCCGGAGTACCAGTCGCGGCTGAATTTAAACCCTGCGGACAGAGTTTCGGCCTCGGATCCGAGCGCGATTCAGCGCCAGTTGCAGCAATTGCAAATTGCGGAGAGCGAGCAAGGCGCGTACCGGAGAAAGAGCGAGGACAATTACCCCGCCGGTGATTATTACGTTCAGAAGCTGCCTGAGAAGTTCCCTCCGGCGAATTTACAGACCAACGCCCAGGGCTACTGGTCGGAAAAGCATGTTTCCGGCGAAGCCTATCCACCGGGGGTGTCCGCTCCGTCCGGTGGAGGAGATGCGCCGGTTTACATGATACCGGCGCCGGGGGGGTTCTATCATGCGCCGGTGGTGCGGCCTCCAGCCACACAGGGGTACTACGCGGTGCAGCGAATGGCTTCAGATGGTTACCGTGAAGCGGCGATGTACGGCGGTGTAACGCCGGCTAAACCGGCGGCTCAAGCGAACTTGGCGCCAGGGCAGCAGCCGGTTAAGGCTCCCGCGTATACGGAAGGATTCGGTGTGATGCGGCCAAGTGGGATAGTGGATAATACGGGTGCGCCGTACGCACAGGTAGCGTACGATAGTGCAGGTGGGAGACAGGTTTATTATACTGCACCGGGTGGCGTAGTGCACGCTCCTCCGTACCATGGCGTTTTTCCTCCGGTCACCTCTGATCTGAGACAAACTGCGGTGACGTTGGGTCAAGATGTTAAAGTGTTGAACAAAGTTACTCAAGGTTCAGTGTGA 1383 0.5813 MENYSYQSYPDSGDSSPRSREIDFDNPPPPWDEQQQQQQNYKVKFMCSYGGKIHPRSHDNQLSYVGGETKILAVDRSIKFGALLAKLSALCEVAPQESNGSSLTFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRASARPARMRLFLFLADTLPSPLPASAPLQPVIKPNNVDFLFGLEKGAGVAVAAQPAQIPPAAVKFHDPVPEPVAPPPEYQSRLNLNPADRVSASDPSAIQRQLQQLQIAESEQGAYRRKSEDNYPAGDYYVQKLPEKFPPANLQTNAQGYWSEKHVSGEAYPPGVSAPSGGGDAPVYMIPAPGGFYHAPVVRPPATQGYYAVQRMASDGYREAAMYGGVTPAKPAAQANLAPGQQPVKAPAYTEGFGVMRPSGIVDNTGAPYAQVAYDSAGGRQVYYTAPGGVVHAPPYHGVFPPVTSDLRQTAVTLGQDVKVLNKVTQGSV 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02974 460 Pfam PB1 domain 58 151 IPR000270 GO:0005515
Viun6g02974 460 Gene3D - 63 153 - -
Viun6g02974 460 MobiDBLite consensus disorder prediction 1 15 - -
Viun6g02974 460 SUPERFAMILY CAD & PB1 domains 58 154 - -
Viun6g02974 460 PANTHER OS05G0427100 PROTEIN-RELATED 9 327 - -
Viun6g02974 460 MobiDBLite consensus disorder prediction 1 38 - -
Viun6g02974 460 SMART PB1_new 57 153 IPR000270 GO:0005515
Viun6g02974 460 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 62 153 - -
Viun6g02974 460 CDD PB1_UP2 46 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02974 Viun-Chr6 32662652 32664380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02974 41 151 MAP Kinase Kinase Kinase AT5G57610 46.847 4.08e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02974 - - var:108341806 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02974 6 32662652 32664380 Viun6g02974 6 32662652 32664380 ECH
Viun3g01661 3 11490927 11492525 Viun6g02974 6 32662652 32664380 PCT