Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02964 ATGAGGAGTTTTCATATGGAGATTTCATCAATCAGAGGGTTACCTGAACTGGGGATAATAGAGGATCCTAACTTTCTTCATCAGTGGCAGTTAAACCCAACTGATACAAGTTGTTTAACAGGAGCTGCTTTTGGTGAGAGTTTGCAGAAGGTCTCATTTTCTGGTAACTCAAACTTCAACCCCAAAGCATCGATGGAAACATCACCAAATGGAAACGAAAGACCCACAAAACAGCTCAGAAACAACAACTGGATTAGCAAGAAAAGTCAGCATCAGACACCAGAGACGCAATATGCTTCATGCTCAAATCTTCTTTCATTTGTTAATTCGAATTTCTCAAATGAATTGGGCCTAGGGAAGCCTAAGGTGGAAATGGTGTGTCCTGAAATTGATAACAGTGCTCTTGCTGAGATGTTGGTCTCTCAAGGAACCTTGGGAAATCAGAACTATCACTTCAAGGCTAACCATGAGGCCATAAAGATTGAAACACGTCCCAAACTTTCTCAGCCTCAGGACCACATAATAGCTGAAAGGAAGCGGAGAGAGAAGCTCAGCCAGCGGTTCATTGCTCTATCTGCTCTCGTTCCTGGCCTGAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCAATCAAGTACTTGAAGCAATTGCAAGAGAAAGTGGGTACTCTTGAGGAGGAACAAAACAGAAAGAGAACTGTGGAATCTGTCGTAACTGTGAAGAAATCTCAGCTATCCGATGATGCTGAAGACTCTTCTAGTTCAGATACCGGTGGTACATTGGACGAGGCACTACCTGAAATCGAAGCAAGATTTTGCGAAAGAAATGTTCTCATAAGAATACACTGTGAGAAGAATAAAGGAATCATAGAGAAAACGATCAGCGAAATTGAGAAACTCCATTTAAAAGTTACCAATAGCAGTGCGTTGTCATTTGGGAGTTTCATTCTTGATATAACCATTATTGCTCAGATGGATATGGAATTCTGCATGACAGTGAAGGATCTCGTGAGAAGTTTACGCTCAGCTTTTTCATATTAG 1041 0.414 MRSFHMEISSIRGLPELGIIEDPNFLHQWQLNPTDTSCLTGAAFGESLQKVSFSGNSNFNPKASMETSPNGNERPTKQLRNNNWISKKSQHQTPETQYASCSNLLSFVNSNFSNELGLGKPKVEMVCPEIDNSALAEMLVSQGTLGNQNYHFKANHEAIKIETRPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAIKYLKQLQEKVGTLEEEQNRKRTVESVVTVKKSQLSDDAEDSSSSDTGGTLDEALPEIEARFCERNVLIRIHCEKNKGIIEKTISEIEKLHLKVTNSSALSFGSFILDITIIAQMDMEFCMTVKDLVRSLRSAFSY 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02964 346 CDD bHLH_AtNAI1_like 171 243 - -
Viun6g02964 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 234 IPR036638 GO:0046983
Viun6g02964 346 Coils Coil 207 234 - -
Viun6g02964 346 Gene3D - 167 242 IPR036638 GO:0046983
Viun6g02964 346 Pfam Helix-loop-helix DNA-binding domain 171 218 IPR011598 GO:0046983
Viun6g02964 346 MobiDBLite consensus disorder prediction 55 78 - -
Viun6g02964 346 PANTHER BHLH TRANSCRIPTION FACTOR 44 344 - -
Viun6g02964 346 SMART finulus 174 223 IPR011598 GO:0046983
Viun6g02964 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02964 Viun-Chr6 32588127 32590881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02964 168 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 62.222 1.28e-64 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun6g02964 HLH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02964 - - gmx:100798018 558.91