Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02962 ATGCTCGCCGGAGGGAATTTCCGGTACTGCTCCACTACTGCCCTGTTATTCCTCTGCCTCGTTGCTTCTTCCCTCTCAGATGAACTTCAACCACTCATGACCTTAAAGTCCTCAGTACAAAGTTCAGATGTAACTGTTTTTAGTTCATGGGAACAAGCAAGTTCTCCCTGCCTATTCACTGGGATTGTATGCAATTCCAAAGGTTTTGTTTCAGAAATCAATCTTCCGCAGAAACAGCTGGAGGGTACTGTTCCCTTTGATTCGCTTTGTGAGCTTCAATCGCTAGAGAAGATATCTTTGGGGTCTAACAACTTGCATGGAAGGATCACTGAGGGGTTGATGAAGTGCACCAACTTGAAGCATTTGGATTTGGGTATGAATTCATTCAATGGAGCAATGCCTGATTTGTCGAGTCTGTACAAGCTGGAGTTCTTGAACTTAAACTCCAGTGGAATTTCAGGCGTGTTTCCATGGAAATCATTGGGAAATCTAACTAGTCTTGAGTTCCTGAGTCTTGGGGATAACCTGTTGAAGGGAAATTCTTTCCCTTTGGAGGTGTTAAAACTTGAAAAATTGTATTGGCTTTACCTCACAAATTGCAGCATCACTGGGAATATTCCATTGGGGATTGGGAATCTGACTCAGCTTCAGAATCTTGAGCTTTCTGACAACCATTTATATGGTGAGATTCCTGCCGATATAGTAAAGCTTCGGAAGCTGTGGCAGCTTGAGTTATATGATAACAATCTGAGTGGGAAAATCCCAGTTGGATTTGGAAACCTTACTAGTCTAGTTAACTTTGATGCTTCTTATAATCAACTTGAGGGTGATCTTTTCGAGGTAAGGTCCTTAAAAAACCTTGCATCCCTTCAGCTTTTTGGGAACAAGTTGTCAGGAGAAATTCCAAAGGAGCTTGGAGATCTCAAGAATCTCACAGAGCTTTCTCTTTATGCGAACAATCTCACTGGTCCTCTTCCTCAAAATCTTGGCTCTTGGGAAGGCATGCAATACATTGATGTTTCTGACAATTTTCTTTCTGGCCCAATACCACCTTTTCTGTGCAAGAACAACCAAATCAGTGAACTGGCACTGTTGAACAACAGCTTCAATGGAACAATACCAGAAACGTATGCAAAATGCACATCTTTGGTTCGTTTTGCTCTGAGCAGGAACTCACTTTCGGGTGTAGTTCCTTCAGGCATATGGGGCTTGCCAAATTTGTCTCTGTTTGATCTTGCAATGAACCAGTTTGAAGGTCCAGTGACATCAGATATAGCCAAAGCAAAATCTCTGGCTCAACTGTTGTTATCTAACAATAAGTTCGCAGGGGAGTTACCGATGGAAATCTCAGAAGCTTCTTCATTGGTGAAAATTCAGCTAAGTTCAAATCAAATTTCTGGTAACATCCCAGAAAGCATTGGCAAGTTGAAGAAACTAACAAGTCTTACTTTAGATGGGAACAATCTTTCTGGTGTCGTACCAGATTCCATTGGTTCTTGTACTTCTCTTAATGAGATAAACCTTGCTGGTAACTCTCTTTCTGGGGCTATACCAGGTAGCATCGGTTCTCTTCCAACTCTCAATTCATTGAACTTGTCCTCAAACAGACTTTCTGGTGAAATTCCATCCAGTTTATCATCTCTGAGACTTAGCCTTCTCGACTTATCAAACAATCAGTTGTTTGGTTCCATACCAGAACCTTTGTCTATTTCAGTTTTCAAAGATGGATTCATGGGAAATCCTGGCTTATGCAGCCAGACTTTGAAAGGTATCACACCATGTTCAATGCAATCCAGAAGCTCCAGGAGACTAAGAAATCTTTTAGTCTGTTTCCTTGCTGCTGTAATGGTTCTGCTTGGAGTGTTTTTCCTCTTCACAAAACTAAGGCAGAATAAGTCCGAGAAGCCACTGAAGACTACTTCCTGGGATGTCAAGCAGTACCATGTGTTAAACTTCAACGAGAGTGAAATCGTTAACGGGATCAAGGCTGAGAATTTGATTGGCAAAGGAGGATCCGGCAATGTTTATCGGGTTGTGCTCAAAGGTGGGGCAGAATTTGCAGTGAAACACATATGGACTTCAAATCTAAGCGACAGGGGAAGTTGCAGGAGCACCTCAACTATGCTTAGAAGGAGTTCAAGGTCACCAGAATTTGATGCAGAGGTGGCCACTCTTAGCTCTATAAGGCATGTGAATGTTGTGAAGCTGTATTGTAGCATCACAAGTGAAGATAGCAGTTTGCTTGTTTATGAGTTTTTACCAAATGGGTGTTTGTGGGACAGGTTGCACACCAGTAAGAAGAAGTCTGAGATGGGGTGGGAGGTTAGGTATGACATTGCATTGGGTGCTGCTAGAGGATTGGAGTATCTGCACCATGGTTGTGATAGACCAGTTATACATAGGGATGTCAAATCCAGCAACATATTGCTGGATGAAGAATGGAAGCCAAGGATTGCAGATTTTGGCCTTGCCAAGATTCTGAATGGAGGACAAGGCAATTGGACCAATGTCATTGCTGGAACACTGGGATACTTACCTCCTGAGTATGCCTACACTTGTAAGGTGACAGAAAAGAGTGATGTTTATAGCTTTGGGGTTGTTCTGATGGAGTTGGTAACAGGGAAGAGGCCAATGGAGGCTGAGTTTGGAGACAATCATGACATTGTGCATTGGGTATGCAGCAGTAATAGGAGCAGAGAAGAGGCTCTTGAATTGGTGGATCCTACTATTGCAGAGCATTTCAAAGAGGATGCCATGAAGGTGTTGAGAATTGCGTTATTGTGCACTGCCAAAATTCCAGCTTCAAGACCATCAATGAGAATGTTAGTTCATATGCTGGAAGAGGCAGATCCATGTACCCCAAACAAAATGATTGTGACCATTGGTGCTTAA 2892 0.4253 MLAGGNFRYCSTTALLFLCLVASSLSDELQPLMTLKSSVQSSDVTVFSSWEQASSPCLFTGIVCNSKGFVSEINLPQKQLEGTVPFDSLCELQSLEKISLGSNNLHGRITEGLMKCTNLKHLDLGMNSFNGAMPDLSSLYKLEFLNLNSSGISGVFPWKSLGNLTSLEFLSLGDNLLKGNSFPLEVLKLEKLYWLYLTNCSITGNIPLGIGNLTQLQNLELSDNHLYGEIPADIVKLRKLWQLELYDNNLSGKIPVGFGNLTSLVNFDASYNQLEGDLFEVRSLKNLASLQLFGNKLSGEIPKELGDLKNLTELSLYANNLTGPLPQNLGSWEGMQYIDVSDNFLSGPIPPFLCKNNQISELALLNNSFNGTIPETYAKCTSLVRFALSRNSLSGVVPSGIWGLPNLSLFDLAMNQFEGPVTSDIAKAKSLAQLLLSNNKFAGELPMEISEASSLVKIQLSSNQISGNIPESIGKLKKLTSLTLDGNNLSGVVPDSIGSCTSLNEINLAGNSLSGAIPGSIGSLPTLNSLNLSSNRLSGEIPSSLSSLRLSLLDLSNNQLFGSIPEPLSISVFKDGFMGNPGLCSQTLKGITPCSMQSRSSRRLRNLLVCFLAAVMVLLGVFFLFTKLRQNKSEKPLKTTSWDVKQYHVLNFNESEIVNGIKAENLIGKGGSGNVYRVVLKGGAEFAVKHIWTSNLSDRGSCRSTSTMLRRSSRSPEFDAEVATLSSIRHVNVVKLYCSITSEDSSLLVYEFLPNGCLWDRLHTSKKKSEMGWEVRYDIALGAARGLEYLHHGCDRPVIHRDVKSSNILLDEEWKPRIADFGLAKILNGGQGNWTNVIAGTLGYLPPEYAYTCKVTEKSDVYSFGVVLMELVTGKRPMEAEFGDNHDIVHWVCSSNRSREEALELVDPTIAEHFKEDAMKVLRIALLCTAKIPASRPSMRMLVHMLEEADPCTPNKMIVTIGA 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02962 963 SUPERFAMILY RNI-like 72 394 - -
Viun6g02962 963 Gene3D Ribonuclease Inhibitor 322 595 IPR032675 -
Viun6g02962 963 Gene3D Transferase(Phosphotransferase) domain 1 753 957 - -
Viun6g02962 963 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
Viun6g02962 963 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Viun6g02962 963 ProSiteProfiles Protein kinase domain profile. 661 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02962 963 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Viun6g02962 963 ProSitePatterns Protein kinases ATP-binding region signature. 667 689 IPR017441 GO:0005524
Viun6g02962 963 Gene3D Phosphorylase Kinase; domain 1 644 752 - -
Viun6g02962 963 Pfam Leucine rich repeat 502 560 IPR001611 GO:0005515
Viun6g02962 963 Pfam Leucine rich repeat 430 489 IPR001611 GO:0005515
Viun6g02962 963 FunFam Receptor-like protein kinase HSL1 286 592 - -
Viun6g02962 963 SUPERFAMILY L domain-like 283 614 - -
Viun6g02962 963 SMART LRR_typ_2 213 237 IPR003591 -
Viun6g02962 963 SMART LRR_typ_2 308 332 IPR003591 -
Viun6g02962 963 SMART LRR_typ_2 476 499 IPR003591 -
Viun6g02962 963 SMART LRR_typ_2 524 548 IPR003591 -
Viun6g02962 963 SMART LRR_typ_2 92 116 IPR003591 -
Viun6g02962 963 SMART LRR_typ_2 164 189 IPR003591 -
Viun6g02962 963 SUPERFAMILY Protein kinase-like (PK-like) 647 947 IPR011009 -
Viun6g02962 963 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 753 960 - -
Viun6g02962 963 Pfam Protein kinase domain 664 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02962 963 FunFam Receptor-like protein kinase HAIKU2 644 752 - -
Viun6g02962 963 FunFam Probable inactive receptor kinase RLK902 25 183 - -
Viun6g02962 963 SMART serkin_6 661 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02962 963 FunFam Leucine-rich receptor-like protein kinase family protein 184 280 - -
Viun6g02962 963 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 210 948 - -
Viun6g02962 963 Gene3D Ribonuclease Inhibitor 185 321 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02962 Viun-Chr6 32568523 32572079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02962 6 960 Receptor kinase-like Gene Family AT1G09970 57.217 0.0 1055
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun6g02962 Pkinase 1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02962 - - gmx:100811489 1593.94