Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02942 ATGAGTAACAGTGATTGGGTGTTGGATTATGATTATCTAGACAACATTTCTTTCCCCACTCTTCACCCACCCAATTTCTCTTGGTCTTCTTCCTCTCCTCCTCCCACCTTCAGTGCGGAGGTAGATGACCCATTGGGAATTTCGGATGGTTTCAAGGAAAACGGGTCAAAGAAACGTTTGAGGTCACCAGGTTCCAAAGCATGTAAAGAGAAAATGAGAAGGGATAGACTCAATGACAGGTTTTTGGAACTGGGGTCTATCCTGGACCCTGCAAGGCCTCTCAAAATGGAAAAGGCTGTTATATTAAGTGATGCAGTTCGAACGGTGTCTCAGTTACGAGAGGAAGCTCAGAAGCTACAAGAGTCCATTAAGAATCTACAAGGGAAAATCAATGAATTGAAGGCTGAGAAGAATGAGCTTCGTGAGGAGAAGCAGCAACTAAAAACAGAAAAAGATAACCTTGAGCAGAAGATTGAGGCCTTTAACTCAAAACCTAGCTTTCTTTCTGCAGTTCCTGCACCAGGACAAGTTGTTGGTAGAAAGTTGGTGCCCTTCATGGGCTACCCAGGAGTTGCCATGTGGCAGTTTTTACCACCTTCTGCTGTTGACACCTCACAGGACCATGTACTCCGGCCACCGGTTGCATAA 648 0.4522 MSNSDWVLDYDYLDNISFPTLHPPNFSWSSSSPPPTFSAEVDDPLGISDGFKENGSKKRLRSPGSKACKEKMRRDRLNDRFLELGSILDPARPLKMEKAVILSDAVRTVSQLREEAQKLQESIKNLQGKINELKAEKNELREEKQQLKTEKDNLEQKIEAFNSKPSFLSAVPAPGQVVGRKLVPFMGYPGVAMWQFLPPSAVDTSQDHVLRPPVA 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02942 215 Gene3D - 65 137 IPR036638 GO:0046983
Viun6g02942 215 MobiDBLite consensus disorder prediction 52 67 - -
Viun6g02942 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 112 IPR011598 GO:0046983
Viun6g02942 215 CDD bHLH_AtILR3_like 66 141 - -
Viun6g02942 215 PANTHER BHLH TRANSCRIPTION FACTOR 4 215 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Viun6g02942 215 MobiDBLite consensus disorder prediction 27 67 - -
Viun6g02942 215 SMART finulus 67 118 IPR011598 GO:0046983
Viun6g02942 215 Pfam Helix-loop-helix DNA-binding domain 65 112 IPR011598 GO:0046983
Viun6g02942 215 Coils Coil 102 164 - -
Viun6g02942 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 139 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02942 Viun-Chr6 32479326 32481803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02942 3 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 56.087 4.63e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun6g02942 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02942 - - ccaj:109814067 335.495