Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02941 ATGGGTATTGATGTCGCAATTGCGGAGGTAGATGACCCATTGGGAATTTCGGATGGTTTCAAGGAAAACGGGTCAAAGAAACGTTTGAGGTCACCAGGTTCCAAAGCATGTAAAGAGAAAATGAGAAGGGATAGACTCAATGACAGGTTTTTGGAACTGGGGTCTATCCTGGACCCTGCAAGGCCTCTCAAAATGGAAAAGGCTGTTATATTAAGTGATGCAGTTCGAACGGTGTCTCAGTTACGAGAGGAAGCTCAGAAGCTACAAGAGTCCATTAAGAATCTACAAGGGAAAATCAATGAATTGAAGGCTGAGAAGAATGAGCTTCGTGAGGAGAAGCAGCAACTAAAAACAGAAAAAGATAACCTTGAGCAGAAGATTGAGGCCTTTAACTCAAAACCTAGCTTTCTTTCTGCAGTTCCTGCACCAGGACAAGTTGTTGGTAGAAAGTTGGTGCCCTTCATGGGCTACCCAGGAGTTGCCATGTGGCAGTTTTTACCACCTTCTGCTGTTGACACCTCACAGGACCATGTACTCCGGCCACCGGTTGCATAA 555 0.4523 MGIDVAIAEVDDPLGISDGFKENGSKKRLRSPGSKACKEKMRRDRLNDRFLELGSILDPARPLKMEKAVILSDAVRTVSQLREEAQKLQESIKNLQGKINELKAEKNELREEKQQLKTEKDNLEQKIEAFNSKPSFLSAVPAPGQVVGRKLVPFMGYPGVAMWQFLPPSAVDTSQDHVLRPPVA 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02941 184 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 30 81 IPR011598 GO:0046983
Viun6g02941 184 CDD bHLH_AtILR3_like 35 110 - -
Viun6g02941 184 Coils Coil 71 133 - -
Viun6g02941 184 MobiDBLite consensus disorder prediction 21 41 - -
Viun6g02941 184 MobiDBLite consensus disorder prediction 18 41 - -
Viun6g02941 184 Gene3D - 34 106 IPR036638 GO:0046983
Viun6g02941 184 SMART finulus 36 87 IPR011598 GO:0046983
Viun6g02941 184 Pfam Helix-loop-helix DNA-binding domain 34 81 IPR011598 GO:0046983
Viun6g02941 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 108 IPR036638 GO:0046983
Viun6g02941 184 PANTHER BHLH TRANSCRIPTION FACTOR 9 184 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02941 Viun-Chr6 32479320 32481803 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02941 8 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 60.733 3.72e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun6g02941 HLH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02941 - - ccaj:109814067 287.73