Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02939 ATGGCGCAAAAGCAGAAGCGTCCTTCCCCTCTCGATGAGCCACCAACGGCTTCTTCTTCAGATTCCGAGGAAGAAGAAACACAAGGACCATCTTCTCTGCGGCATGGAAAAGAAGAGGAAGAAGCTTCGTCGGGAGAAGAGGAAGATGAATCATCCGGAGAAGAGGCAGAAGATGACGATCTTCCACCACCCATCACCAAAACCAACCCTCCACCCCCTCCCACCAACCCCCACCCCCAACCCTCATCTTCTGATTCCGAAACAGAATCCGAATCAGAGACCGAGTCAGAAACTGAATCCACTCCTGCGAAGGCGGTGAAGCCTCTCGCGACCAAGCCCATGGACCAGGCCCAAAAGCTCAAGGCGCTACCTTCTCCGGCGCCGCCTAAACCGGCTCTGAAACGCCCCGCCGAGAACAGCAACGCCCACGTCGCGAAGAAAAAGAAGAAATCCGGCGATTCTTCTTCTTCCCCTGCCGCTTCCGACGAAGAGATGGAGGACGGGAAGAAGTCCGGCGATCAAATGAAGAAGTTTCAGAGGCTGTGGAGCGAGGAGGACGAACTCGCCATTCTGAAGGGCTTGGCTGAGTTCACCTCAAAAACAGGGCACGACCCTCTCAAGTTTGCGGGTGGCAATGCTTTCCATGATTTCTTGAAGAAGTCGCTGCATGTGGAAGTTACCAGCAACCAGCTGAAGGAGAAGGCGCGGAGACTGAAGAAGAAGTATGAGACCGCTGCAGTGAGAGGGAATAGCGCTGATGGCCTTACATTTGCAAAGCCGCACGATCAGAAAACGTTTGAATTGTCGAAAAAAGTTTGGGGAAGTGAGCAAGATGGTGGAGTGGCCAATGGGACAGTGGAAAAGCCCAAGGCTAACGGGAATGCTGCTAAGAGTCCGAAGAAGAAGGAAACCGGTAGCCGGAATGTGGCTTCTGCCAAGAAAGCTAAACCTGAACCGAAACAGGAGACGGTGCCAGCGACGCGCATTGAGTTGAAGGAATCTGAAAAGATGAACATTGATCAAAAGCCTGTTCATTGTGAAGTGAGTATGTTTTTGAATGCATTGTCCCACTTTAAAGAGGGTCTGGGTGTTTGTGGGTTGGACGAGGAGGATGTGAAGAAGGGGTTGGAATTGATTGGTGAATCGAAGAGGACAGAGTTGAGGGCAAAGTGGAAGAAATTACAACGTACTGAATTGGAACTGTTTGCTAATCGCTCTGAACTGATTGGGGAGCAGACTAAATTGATAGTTGAGGCACTTCGGTCGTCCAACCATTAG 1278 0.5125 MAQKQKRPSPLDEPPTASSSDSEEEETQGPSSLRHGKEEEEASSGEEEDESSGEEAEDDDLPPPITKTNPPPPPTNPHPQPSSSDSETESESETESETESTPAKAVKPLATKPMDQAQKLKALPSPAPPKPALKRPAENSNAHVAKKKKKSGDSSSSPAASDEEMEDGKKSGDQMKKFQRLWSEEDELAILKGLAEFTSKTGHDPLKFAGGNAFHDFLKKSLHVEVTSNQLKEKARRLKKKYETAAVRGNSADGLTFAKPHDQKTFELSKKVWGSEQDGGVANGTVEKPKANGNAAKSPKKKETGSRNVASAKKAKPEPKQETVPATRIELKESEKMNIDQKPVHCEVSMFLNALSHFKEGLGVCGLDEEDVKKGLELIGESKRTELRAKWKKLQRTELELFANRSELIGEQTKLIVEALRSSNH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02939 425 MobiDBLite consensus disorder prediction 294 325 - -
Viun6g02939 425 MobiDBLite consensus disorder prediction 1 177 - -
Viun6g02939 425 MobiDBLite consensus disorder prediction 27 41 - -
Viun6g02939 425 PANTHER BNAANNG10740D PROTEIN-RELATED 73 419 IPR007592 GO:0006355
Viun6g02939 425 MobiDBLite consensus disorder prediction 162 177 - -
Viun6g02939 425 MobiDBLite consensus disorder prediction 42 59 - -
Viun6g02939 425 Coils Coil 228 248 - -
Viun6g02939 425 MobiDBLite consensus disorder prediction 277 325 - -
Viun6g02939 425 MobiDBLite consensus disorder prediction 64 80 - -
Viun6g02939 425 MobiDBLite consensus disorder prediction 12 26 - -
Viun6g02939 425 Pfam Protein of unknown function, DUF573 178 274 IPR007592 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02939 Viun-Chr6 32470696 32472273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02939 106 422 GeBP Transcription Factor Family AT4G25210 32.198 2.16e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Viun6g02939 DUF573 2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02939 - - gmx:100791520 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02939 6 32470696 32472273 Viun6g02939 6 32470696 32472273 ECH