Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02930 ATGCTCACTTTACAAAGCCTTCAAACACATCCCTTTCCTCAGATCAAAACCCACCCTCCACCCCCACAAATGGAGTATGAAGATGAGGATTGGTTATGTGTTACTTTGGAAGAGTTTTCTCTTGCTACTGAAAATGGTTCTAGCAAGCAAGGGATGGGTAGGAAGAGGAACTATGATGATGAGACCAGAGAGTTCAAATCAAAGAATCTTGAGACTGAAAGGAGGAGGAGGGAGAAGCTCAGTAGCAGACTCTTGATGCTGCGTGCTATAGTGCCTATCATCACAAATATGAACAAAGCCACAATCATTGAAGATGCTATCACTTACATTGAGAAGCTTCAAGACAAAGTCCAGAGTCTCAGCCAAGAGCTTCACCAAATAGAAGCAACTTCAGAGGAAACAGCAGAGACAAAAATAGATGAAATTGATGCTGCACAAGATATGAAGGATTTGGGGATACAGGAAGAAGTTAGAGTAGCACAGATAGACGGTAATAAACTGTGGGTTAAGATCATCATTGAGAAGAGAAAAGGAAGATTCAGAAAATTGATGGAAGCTCTCAATAATTTCAGCATTGAACTCATAGACACCAATCTCACAACCACAAAAGGAGCCTTTCTTATTACAAGTTGTATACAGATGAATAGAGGAACAATTATTGTAGATGCTATCACCTACATTGAGAAGCTGCAAGACGAAGTCCAGAATCTTAGCCAGCAACTCCATCAAATGGAAGCAACCTCAGAAGAAACAACAGAGACAAAAATAGATGAAATTGAAGCTGTGGAATATATGAAGAATTGGGGGATACAGGAAGATATCACAGTGGCACAAATAGATAAGAATAAGTTCTGGGCCAAGATCATCATTGAGAAAAAAAGGGGAGGTTTCAGCAAGTTGATGGAGACACTCAATTACTTTGGCATTGAGCTCATGGACACTAATCTCACTACCACAAAAGGAGCATTTCTGATTACAAGCTGTATGCAGGGAAAAAATGGAGAAAGACTTGAAATTAATCAAATCAAGGATTTGTTGCAAGACATTATCAATGACATGTAG 1062 0.3945 MLTLQSLQTHPFPQIKTHPPPPQMEYEDEDWLCVTLEEFSLATENGSSKQGMGRKRNYDDETREFKSKNLETERRRREKLSSRLLMLRAIVPIITNMNKATIIEDAITYIEKLQDKVQSLSQELHQIEATSEETAETKIDEIDAAQDMKDLGIQEEVRVAQIDGNKLWVKIIIEKRKGRFRKLMEALNNFSIELIDTNLTTTKGAFLITSCIQMNRGTIIVDAITYIEKLQDEVQNLSQQLHQMEATSEETTETKIDEIEAVEYMKNWGIQEDITVAQIDKNKFWAKIIIEKKRGGFSKLMETLNYFGIELMDTNLTTTKGAFLITSCMQGKNGERLEINQIKDLLQDIINDM 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02930 353 Gene3D - 181 267 IPR036638 GO:0046983
Viun6g02930 353 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 113 IPR011598 GO:0046983
Viun6g02930 353 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 209 347 - -
Viun6g02930 353 Pfam Helix-loop-helix DNA-binding domain 68 114 IPR011598 GO:0046983
Viun6g02930 353 Coils Coil 103 137 - -
Viun6g02930 353 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 129 IPR036638 GO:0046983
Viun6g02930 353 Coils Coil 220 254 - -
Viun6g02930 353 Gene3D - 56 130 IPR036638 GO:0046983
Viun6g02930 353 SMART finulus 70 119 IPR011598 GO:0046983
Viun6g02930 353 SMART finulus 171 236 IPR011598 GO:0046983
Viun6g02930 353 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02930 Viun-Chr6 32420107 32424705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02930 214 350 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 39.310 1.84e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun6g02930 HLH 4.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02930 - - vun:114186874 680.248