Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02926 ATGGCTGAGGAGTTTCAAGCTGCTATTTGTGGTGAAAGTTGGTGGAATATTAATTCAACAAGAAGTGTGTTCCCTCTCATGTCATCAACATGTTCCGTGGCAGCAGCTGATGCAGGAAACTACAGCACTTGGCAAAGCACTGATTTCGTGGATTTGAAAGGAACGAGGTCTTGCGCTGAGGACATTAATAACTTCATTTCTTCTGATAATTCTCTGAGTTTTCTTGATGTTGAGAAGCCCCAGCAGAGGGACTCGGCTGGTGAAACTGGTAGCATCCTCACCGATTCCACCTTACAAATGATAGGTTTTGGCATGTCATCTTCAACTTCATCGAATTGGAATCAATCTTTATTAGGGAGCGATTTTCATTCTGTGCTTCAAGGAGAAACAGGCATGGATGGCGGTTCTTCCCATGATTCACAAATCCAGAAGGATTGGAATCCAAAGAATTTCTCATCTGCTGGTGGCCAAGGTTCCACCGTTGATGCTTTCAAGTCAATGAACCAAGAATTTTCCTTGGATCAGCAAAGTCTGAATTCCGTTGTCACAAGCACCGGATCATTATCTGGTGGTTTTCCAGTTGTTTCAGCCTCCTATGGTTACCCTTCAACCTTGATACAAGGCTTATACGACCCTGAGCCTCAACCACAACCACAGAACTCACTTTTCACCAACCCCCCCATGTCCTATTCTTCATCTACCGCAAACTATGGGACATGTTCCAATGAACTGTCACCAACTTGGTCCAAAATCTCTTCACTTCTCAAGCCCTCAACGCCAAAACAGCAGCTTAGTGGATTGCACTTTTCCAACAACACTTCTTTCTGGAATGGTTCAGCCGAAGCACTTCATGACATAAGAGCAGGTGTTTTTGCTTCCTCACAGGCACAATATCAAACGCCAAAATTTGAAGAGAAATCCAACAGCCCCAATACTCTATTAAACAAGCTCAAGAGAGAAGAATCGCCAGACGCAACCTCATCTGCTAAGAAAAGTTCTTCTGAGCCTGCATTCAAGAGGCAAAGAATTGAGACTCCATCTCCATTACCAACTTTTAAGGTAAGGAAGGAAAAGCTAGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTTGGAAAGACGGACACAGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGACCAAGTCAGTGTGTTAAGCACTCCATATATTAAAAATGGAGCTCCCATTCAACACCAGCAGGATTGTGATAATCTGAAGGAGTCAGAAGGGAGAAAACAAGATCTGAGAAGCCGAGGGCTGTGTTTAGTACCGATTTCGAGCACGTTCCCAGTGGCCAATGAGAGCAGTGTGGATTTCTGGACGCCAACATTCGGAGGTGCAGTGATTGGGAGGTAG 1398 0.4478 MAEEFQAAICGESWWNINSTRSVFPLMSSTCSVAAADAGNYSTWQSTDFVDLKGTRSCAEDINNFISSDNSLSFLDVEKPQQRDSAGETGSILTDSTLQMIGFGMSSSTSSNWNQSLLGSDFHSVLQGETGMDGGSSHDSQIQKDWNPKNFSSAGGQGSTVDAFKSMNQEFSLDQQSLNSVVTSTGSLSGGFPVVSASYGYPSTLIQGLYDPEPQPQPQNSLFTNPPMSYSSSTANYGTCSNELSPTWSKISSLLKPSTPKQQLSGLHFSNNTSFWNGSAEALHDIRAGVFASSQAQYQTPKFEEKSNSPNTLLNKLKREESPDATSSAKKSSSEPAFKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLSTPYIKNGAPIQHQQDCDNLKESEGRKQDLRSRGLCLVPISSTFPVANESSVDFWTPTFGGAVIGR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02926 465 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 409 IPR036638 GO:0046983
Viun6g02926 465 FunFam Transcription factor bHLH123 family 353 415 - -
Viun6g02926 465 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 166 444 - -
Viun6g02926 465 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 392 IPR011598 GO:0046983
Viun6g02926 465 CDD bHLH_AtbHLH_like 349 400 IPR045239 -
Viun6g02926 465 MobiDBLite consensus disorder prediction 317 345 - -
Viun6g02926 465 Gene3D - 353 407 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02926 Viun-Chr6 32396624 32399852 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02926 1 460 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 38.155 3.07e-66 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02926 - - gmx:100794682 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01603 3 10919044 10921940 Viun6g02926 6 32396624 32399852 PCT