Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02922 ATGGCGTCTGAGGTAGACGTTCCCGACCACTTAAAGTGTCCCATTTCCCTCCAAATAATGTCCGACCCGGTCATTCTCTCTTCCGGACACACCTTCGACCGCTCCTCCATCCAACGCTGGCTCGACGCCGGCCACCGCACTTGCCCAATTACCAAACTACCCCTTTCACAACACTCTTCCCTCATCCCCAACCACGCTCTGCGAAGCTTAATTTCCAACTACGCCCCCATAAACCCTCTTAACCATTCTCACCCACACACCCTAATCTCCACCCTCACCTCTCTCTCTTCCTCTCCCATCTCCAAACTTGACGCGCTCCGCCTCCTCACGCGCCTATCCCACGCTGACTCCCTCTTTCGCCGCCGCCTCTCCGACTCCCCCGCCTTACTCCCCGCGCTTCTCTCATGCCTCCACGATGCCTCCTCCCCCGCCCTCCGCCACCGTGTCCTCTCCCTCCTCCTCCACCTCTCCCTCGACGACGACACCAAAGTCGGCCTCGTCGCCGAGGGCGTCCTCTCCCGCATCGTAGCCCTGCTCTCTGCCCCCTCCGACTGCCGCGCCGTCGCCGCCACCCTCCTCACCAGCCTCGCCGTCGCCGCCACCCTCCTCACCAGCCTCGCCGTCCTCCACGTCAACAAGGCCACCATCGGGGCCTTCCCCCGCGCCATCCACGCCCTCGTCTCCCTCATACGCGAAGGCAGGCCCAGGGAGAGTAAAGAAGCCGCCACCGCGCTCTTCGCTCTCTGCTCCTTCCCCGACAACCGCAGCCGGGCGGTCGAGTGCGGCGCCGTCCCCGCTCTCCTTCGGAGCGCCGATTCGGGGCTGGAGAGGAGCGTGGAGGTTATCGGGGTTTTGGCGAAGTGTAAGGAGGGGAGGGAGCAGATGGTACGGTTTGGCGAATGCGTGAAGATTCTTGCTCGTGTGTTGAGGAATGGAAGCTCCAGTGGAGTTCAGTATGCTCTTATGGCTCTATATTCTCTCTGTTATCATAGTGAGGAAAGTGTTCTTGAGTCCTTGAAAAATGGGGTTTTGGAAATTTGTGAAGGGTTGTTGCAGGATGATAATGCCAAGGTGAAGATGAATTCCTCATGTTTGATTCAGCTTCTCCGTCAACACCCATTGGCTGAGTTGAGATAA 1137 0.5937 MASEVDVPDHLKCPISLQIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLSQHSSLIPNHALRSLISNYAPINPLNHSHPHTLISTLTSLSSSPISKLDALRLLTRLSHADSLFRRRLSDSPALLPALLSCLHDASSPALRHRVLSLLLHLSLDDDTKVGLVAEGVLSRIVALLSAPSDCRAVAATLLTSLAVAATLLTSLAVLHVNKATIGAFPRAIHALVSLIREGRPRESKEAATALFALCSFPDNRSRAVECGAVPALLRSADSGLERSVEVIGVLAKCKEGREQMVRFGECVKILARVLRNGSSSGVQYALMALYSLCYHSEESVLESLKNGVLEICEGLLQDDNAKVKMNSSCLIQLLRQHPLAELR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02922 378 Gene3D - 278 375 IPR011989 -
Viun6g02922 378 SUPERFAMILY ARM repeat 87 369 IPR016024 -
Viun6g02922 378 FunFam RING-type E3 ubiquitin transferase 6 78 - -
Viun6g02922 378 Gene3D - 85 198 IPR011989 -
Viun6g02922 378 Gene3D - 199 277 IPR011989 -
Viun6g02922 378 ProSiteProfiles U-box domain profile. 6 81 IPR003613 GO:0004842|GO:0016567
Viun6g02922 378 PANTHER U BOX DOMAIN-CONTAINING 7 359 - -
Viun6g02922 378 CDD RING-Ubox_PUB 8 57 IPR045210 -
Viun6g02922 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 80 IPR013083 -
Viun6g02922 378 SMART Ubox_2 10 74 IPR003613 GO:0004842|GO:0016567
Viun6g02922 378 Pfam U-box domain 7 74 IPR003613 GO:0004842|GO:0016567
Viun6g02922 378 SMART arm_5 159 198 IPR000225 GO:0005515
Viun6g02922 378 SMART arm_5 288 329 IPR000225 GO:0005515
Viun6g02922 378 SMART arm_5 212 250 IPR000225 GO:0005515
Viun6g02922 378 SUPERFAMILY RING/U-box 4 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02922 Viun-Chr6 32381763 32383591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02922 6 375 U-box Gene Family AT4G21350 54.188 1.41e-126 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02922 - - gmx:100796272 513.842