Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02920 ATGGAGAAAACCAAGTTCACCCTTTTATTTCTTGTTACTTGTTGCCATTTTCTGTCCTTGTTTCCTACAGCTTTGGAAGCAGAGGATGAAATAACTCCTCCACAGACCATCAGTGGCAACCAGACACTAGTCTCACCTTCTCAAAATTTTGAACTGGGTTTCTTCAGTCCTGGCAATTCCACTCACATTTATCTTGGAATATGGTACAAGCGTATCCCAAACCAGACAGTTATTTGGATTGCAAATAGAGACAAACCACTAGTTAACTCTGGTGGCTCCTTGGCATTCAGTGATGATGGCAAGCTCGTTCTTCTAAGCCACACAGGAAGTGTTGCATGGTCCTCAAACTCATCAGGACCTGCAAAAAATCCAGTGGCCCAGCTACTAGATTCCGGAAACTTGGTGTTGAAAGACTATGGAAATGAGAGATTTTTGTGGGAGAGTTTTGATTACCCATCTGACACATTGATACCAGGAATGAAACTTGGTTGGAACTTCAAAACTGGCTTGAATCGACACTTGACTTCCTGGAAAACCACTTCTGATCCTTCTTCGGGAGAATACACCTACAGTGTGGATCCACGTGGCCTTCCTCAGCTTTTCCTTCACAAGGGAAACAAGCAGATCTTCAGAAGTGGACCATGGTATGGACAACAGTTCAAAGGTGACCCGGTTCTCAGTGCAAATCCTGTTTTCAAACCCATATTTGTGTTTGATTCTGATGAAGTCTCTTACTCCTATGAGACCAAAGACACCATCATCTCAAGATTTGTGCTGAGTCAGTCTGGTTTGATTCAGCATTTTTCATGGAATGATCATCATTCAAGTTGGTTTTCTGAATTTTCAGTTCAAGGGGACCGTTGTGATGATTATGGGCTTTGTGGTGCTTACGGTTCTTGTTACATCAATAGCTCCCCTGTTTGCAAGTGTTTGAAGGGTTTTGAACCTAAGCTTCCGCAGGAGTGGGAAAGGTCTGAGTGGTCAGATGGATGTGTTAGAAAAAACACACAGGTTTGCAGCAATGGAGATGCATTTCAGCAGTTTACAGGAATGAAGCTTCCAGATGCAGCCGAGTTTCGTACAAACTACAGCATCAGCATTGATCACTGTGAGAAAGAATGCTCTAAGAGCTGCTCTTGTGTTGCTTATGCAAAACTAGATATAAATGCAAGTGGCAAAGGTTGTATTGCATGGTTTGGGGATTTGTTGGATATAAGAGAGGTTTCTGTGAATGGACAAGATTTCTACCTGAGGGTTGCAGCTTCAGAAGTGGGTAAGAACATGGAAGGTTCAAATGCTGATGGAAGTAAAAGGAAGAAAATCATACTGTTTCCTGTGGCTGCATCTGTAACTTCAACAATTATTGTATCAACATTGTGGTTGATAATTAAGAAATGCAGAAGAAATGGAGCCAAACAGACCGGTACTCAGTTTAGTGTTGGCAGAGTCAGGAGTGAAAGGAATGAGTTTGAACTTCCAATGTTTGAGATTGCCATGATTGAAGCCGCCACCAGGAATTTCTCTAGTTGCAACAAGATTGGAGAAGGTGGATTTGGTCCTGTATACAAAGGTCAACTTCCATCAGGACAGGAAGTAGCTGTGAAAAGGCTGTCAGAGAATTCTGGACAAGGCCTGCAGGAGTTCAAGAATGAGGTCATTTTGATCTCCCAACTTCAGCATCGAAATCTTGTCAAGCTTCTGGGTTGTTGCATTGACGGTGAAGATAAAATATTGATCTATGAATACATGCCAAACAGAAGCTTGGACTCCTTATTATTTGATGAAACCAAGCGTTCCGTGCTCAGTTGGAAAAAGAGGCTAGACATAATTATTGGCATTGCTCGTGGAATTCTCTACCTTCACAGAGATTCAAGACTGAGAATAGTCCATAGAGACCTGAAAGCAAGCAATGTTCTTTTAGATGGTGAAATGAATCCAAAAATTTCTGACTTTGGAATGGCAAGAATGTTTGGTGGAGATCAAACTGAAGCAAAGACCAAGAGAGTAGTGGGAACCTATGGATGTATGGCCCCGGAGTATGCAATAGATGGACACTTCTCTTTCAAATCGGATGTTTATAGCTTCGGGGTTTTACTCTTGGAACTGTTGAGCGGCAAGAAAAACAAAGGATTTTTTCACCCAGATCACAAACTGAATCTCCTAGGCCATGCATGGAAGGTATGGAATGAAGAGAGGGCGTTGGAGCTGATGGATCCATTGCTTGAGGGTGAGTTTCCGACATGTGAAGCTCTTAGGTGTATTAAAGTGGGTCTGTCATGTGTCCAACAGCTTCCAGAAGACAGGCCAACAATGTCATCAGTGGTTTTGATGTTGGACAGTGAGAATGTGTTGATCCCCCAACCGGGAAGGCCAGGAATATATTCGGAGAGGTTTTTCTCTGAGACAAATTCATCATCACACGGTGGACTCAACTCTGCTTCCAACGACCCAACTGTTACTTCGCTTGAGGCTCGTTGA 2478 0.4282 MEKTKFTLLFLVTCCHFLSLFPTALEAEDEITPPQTISGNQTLVSPSQNFELGFFSPGNSTHIYLGIWYKRIPNQTVIWIANRDKPLVNSGGSLAFSDDGKLVLLSHTGSVAWSSNSSGPAKNPVAQLLDSGNLVLKDYGNERFLWESFDYPSDTLIPGMKLGWNFKTGLNRHLTSWKTTSDPSSGEYTYSVDPRGLPQLFLHKGNKQIFRSGPWYGQQFKGDPVLSANPVFKPIFVFDSDEVSYSYETKDTIISRFVLSQSGLIQHFSWNDHHSSWFSEFSVQGDRCDDYGLCGAYGSCYINSSPVCKCLKGFEPKLPQEWERSEWSDGCVRKNTQVCSNGDAFQQFTGMKLPDAAEFRTNYSISIDHCEKECSKSCSCVAYAKLDINASGKGCIAWFGDLLDIREVSVNGQDFYLRVAASEVGKNMEGSNADGSKRKKIILFPVAASVTSTIIVSTLWLIIKKCRRNGAKQTGTQFSVGRVRSERNEFELPMFEIAMIEAATRNFSSCNKIGEGGFGPVYKGQLPSGQEVAVKRLSENSGQGLQEFKNEVILISQLQHRNLVKLLGCCIDGEDKILIYEYMPNRSLDSLLFDETKRSVLSWKKRLDIIIGIARGILYLHRDSRLRIVHRDLKASNVLLDGEMNPKISDFGMARMFGGDQTEAKTKRVVGTYGCMAPEYAIDGHFSFKSDVYSFGVLLLELLSGKKNKGFFHPDHKLNLLGHAWKVWNEERALELMDPLLEGEFPTCEALRCIKVGLSCVQQLPEDRPTMSSVVLMLDSENVLIPQPGRPGIYSERFFSETNSSSHGGLNSASNDPTVTSLEAR 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02920 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 583 786 - -
Viun6g02920 825 CDD PAN_AP_plant 339 420 - -
Viun6g02920 825 SMART ntp_6 340 419 IPR003609 -
Viun6g02920 825 ProSiteProfiles Bulb-type lectin domain profile. 28 149 IPR001480 -
Viun6g02920 825 ProSiteProfiles EGF-like domain profile. 284 320 IPR000742 -
Viun6g02920 825 FunFam Os04g0303100 protein 67 209 - -
Viun6g02920 825 Pfam D-mannose binding lectin 76 178 IPR001480 -
Viun6g02920 825 Gene3D Transferase(Phosphotransferase) domain 1 583 784 - -
Viun6g02920 825 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 769 - -
Viun6g02920 825 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Viun6g02920 825 Pfam Protein tyrosine and serine/threonine kinase 510 776 IPR001245 GO:0004672|GO:0006468
Viun6g02920 825 CDD STKc_IRAK 513 779 - -
Viun6g02920 825 PIRSF SRK 1 825 IPR024171 GO:0004674
Viun6g02920 825 Gene3D - 23 149 IPR036426 -
Viun6g02920 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 464 582 - -
Viun6g02920 825 CDD B_lectin 35 152 IPR001480 -
Viun6g02920 825 Gene3D Hepatocyte Growth Factor 335 417 - -
Viun6g02920 825 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 183 IPR036426 -
Viun6g02920 825 MobiDBLite consensus disorder prediction 803 825 - -
Viun6g02920 825 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 149 - -
Viun6g02920 825 ProSiteProfiles PAN/Apple domain profile. 339 420 IPR003609 -
Viun6g02920 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Viun6g02920 825 SUPERFAMILY Protein kinase-like (PK-like) 488 778 IPR011009 -
Viun6g02920 825 ProSiteProfiles Protein kinase domain profile. 507 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02920 825 SMART blect_4 34 152 IPR001480 -
Viun6g02920 825 Gene3D Phosphorylase Kinase; domain 1 470 582 - -
Viun6g02920 825 SMART serkin_6 507 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02920 825 Pfam PAN-like domain 339 405 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02920 Viun-Chr6 32377754 32381609 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02920 437 821 Receptor kinase-like Gene Family AT4G05200 50.646 8.64e-127 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun6g02920 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02920 - - gmx:100804024 1495.33