Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02918 ATGCAAGTGCAGCTTTGTGCCATTTCAAATTGGCTGCCAAACATGACCAAGAGGAGAGTGAGATGGAACAAACTTGATATCATTATGTTTGCTTATGCTTGTATATCAATCCTTCACAATACTTCTTATGCAGACGATGCCTTGACTCCAACATCTTCCATTGCAGATGGCCAAGAACTCATTTCTGCTGGACAGAATTTTTCTCTTGGATTCTTCACTCCAGGAGCATCAAAGAGCCGCTACATAGGGATATGGTACAAGAATATTAAGCCTCAAACCATAGTTTGGGTAGCAAACAGAGATAACCCACTTAATGACTCGAGAGGAAATTTAACCATTGCTGCTGATGGTAATATTGTACTTTTTGATGGAGCAGGTAACAGAATATGGTTTACAAATTCATCAAGGTCAATCCAAGAACCAATTGCAAAGCTGTTGGATTCTGGAAACTTTGTGTTGATGGATGGCAAGAAGAGTGATTCTAAAGGTTACATATGGCAGAGCTTTGATAATCCAACGGACACAATGATACCTGGGTTGATGTTGGGTTGGGATAAGAACTTAGGTATCGACAGATATTTGACTTCTTGGAAGAGTGCTAATGATCCCTCTCCTGGAAACTTTACCTTCAGATTTGACCAGATAGAATTTCCTGAGTTGGTAATCCGTCAGGGAATGAACATCACATTCAGAAGTGGAATTTGGGATGGCATCCGTTTTAATTCAGATGATTGGTTGTCATTTATTGGAATTACAGCCTTCAAGCCACAACTTTCAGTGAACAGCACTGTGGCAGTGTATTGGGATGAACCTGGAGATAGATTGTCAAGATATGTGATGAAGGATGATGGATTCCTTCAAAGATATATCTGGGACAACAAAAATTTGAAGTGGACTCTGATGCATGAGGGAAGAAAAGACTTTTGTGATAACTACGGAGCATGTGGGGTGAACGGTATTTGCAATATGAAGGATATTCCTGCTTACTGCGATTGCCTGAAAGGGTTTATACCAAATTCTCCGGAAGATTGGGATTCGTTTAACTGGTCTGGTGGGTGCATCAGGAGAACACCCTTAAACTGCACACAAAGTGATAGGTTTCAGAAACTAAGCTGGGTTAAACTACCCATGTTGTTGCAATTTTGGACTAATGAAAGCATGAATCTTGAAGAATGCAAGTTGGAGTGCTTGAAGAACTGTTCCTGCACGGCCTACGCAAATTCAGCCTTGAATGAAGGGCCTCATGGATGCTTGCTCTGGTTTGGGGACTTGACTGACATTCGGCAGCTTATAAATGAAGAGGGTGTACAACTTGATCTTTATTTAAGGTTAGCCGCTTCAGAAATAGAGTCCACTGCTAATGCACGTAAAAGGAGAAACATTGCTGTGATTATTTCGGTACCTGTGGCACTGCTGCTTTGTTGTATCATTTTCTACCTTTTCAAGAAGTATATAAAACGGAGGACAAGCACTGGTTTGGTCACAATCACAAGTCACAGAAATCACAACGAAGATCAAGCATCACCTATTTTTGATATAGATACTATTCTGGCTGCTACAAACAATTTTTCCATTGAGAACAAGATCGGGGAAGGTGGTTTTGGTCCAGTATACAGGGGTAAACTGGCTAACGGACAAGAAATAGCGGTGAAAAGGCTATCAAAAACCTCAAAACAAGGCATCTCAGAGTTTATGAATGAAGTTGGATTGGTAGCCAAACTCCAACACCGTAATCTTGTGAGTGTTTTAGGAGGGTGCACTCAAAGAGAGGAAAGAATGCTGATCTATGAATACATGCCAAATAGTAGCTTGGACCACTTCATTTTTGATCCTATACAAGGAAAATTTTTGAACTGGAGGAAACGATATGAAATTATCATTGGGATTGCTCGAGGACTACTTTATCTCCACCAAGATTCAAAACTAACCATCATTCATAGGGATCTAAAAACTAGTAACATTCTACTAGACAGCCAATTGAACCCCAAAATTTCTGATTTTGGTGTGGCCCGAATCGTTGAAGGAGATCATTCTTCAATTACAACAGAAGAGATTGCTGGGACAATTGGTTATATGCCCCATGAGTATGCAGTAAACGGGATTCTTTCCCTGAAGTCTGATGTATATAGCTTCGGAGTTATAGTGTTAGAGATACTAAGCGGGATCAGAAGTAGTCACTACAAAGTCAAGCATCCAGATCATGATCACAATCTGTTGGGGCAGGCATGGACATTATGGAAAGATGGACGTGCTGTGGGATTTATGGATGTTAATTTAGACCTTACAGTTGTTCCATCAGAATTACTAAGGTGCCTGCAAGTTGGTCTCTTGTGTGTTCAAAAGTTACCCGAAGATAGACCAACTATGTCTTCTGTGGTTTTTATGTTGAGCAATGAAAGCATTGCACTTCCCCTACCAAAGAAAACTGGCTTCTTTGAAGAAGAGTCAGAGTATCATCATGCGTACAGCGAGAATGAGAGTTTTAGTAACAATGCTATGACTATAACTCTATTAGAAGCTCGAAGTTAG 2529 0.4041 MQVQLCAISNWLPNMTKRRVRWNKLDIIMFAYACISILHNTSYADDALTPTSSIADGQELISAGQNFSLGFFTPGASKSRYIGIWYKNIKPQTIVWVANRDNPLNDSRGNLTIAADGNIVLFDGAGNRIWFTNSSRSIQEPIAKLLDSGNFVLMDGKKSDSKGYIWQSFDNPTDTMIPGLMLGWDKNLGIDRYLTSWKSANDPSPGNFTFRFDQIEFPELVIRQGMNITFRSGIWDGIRFNSDDWLSFIGITAFKPQLSVNSTVAVYWDEPGDRLSRYVMKDDGFLQRYIWDNKNLKWTLMHEGRKDFCDNYGACGVNGICNMKDIPAYCDCLKGFIPNSPEDWDSFNWSGGCIRRTPLNCTQSDRFQKLSWVKLPMLLQFWTNESMNLEECKLECLKNCSCTAYANSALNEGPHGCLLWFGDLTDIRQLINEEGVQLDLYLRLAASEIESTANARKRRNIAVIISVPVALLLCCIIFYLFKKYIKRRTSTGLVTITSHRNHNEDQASPIFDIDTILAATNNFSIENKIGEGGFGPVYRGKLANGQEIAVKRLSKTSKQGISEFMNEVGLVAKLQHRNLVSVLGGCTQREERMLIYEYMPNSSLDHFIFDPIQGKFLNWRKRYEIIIGIARGLLYLHQDSKLTIIHRDLKTSNILLDSQLNPKISDFGVARIVEGDHSSITTEEIAGTIGYMPHEYAVNGILSLKSDVYSFGVIVLEILSGIRSSHYKVKHPDHDHNLLGQAWTLWKDGRAVGFMDVNLDLTVVPSELLRCLQVGLLCVQKLPEDRPTMSSVVFMLSNESIALPLPKKTGFFEEESEYHHAYSENESFSNNAMTITLLEARS 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02918 842 Pfam Protein tyrosine and serine/threonine kinase 524 793 IPR001245 GO:0004672|GO:0006468
Viun6g02918 842 CDD STKc_IRAK 529 796 - -
Viun6g02918 842 Gene3D Phosphorylase Kinase; domain 1 496 598 - -
Viun6g02918 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Viun6g02918 842 SMART blect_4 51 172 IPR001480 -
Viun6g02918 842 Pfam S-locus glycoprotein domain 230 339 IPR000858 GO:0048544
Viun6g02918 842 ProSiteProfiles Protein kinase domain profile. 523 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02918 842 Pfam PAN-like domain 361 427 IPR003609 -
Viun6g02918 842 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 32 787 - -
Viun6g02918 842 Gene3D - 40 169 IPR036426 -
Viun6g02918 842 Gene3D Transferase(Phosphotransferase) domain 1 599 803 - -
Viun6g02918 842 SUPERFAMILY Protein kinase-like (PK-like) 506 796 IPR011009 -
Viun6g02918 842 Pfam D-mannose binding lectin 93 198 IPR001480 -
Viun6g02918 842 SMART ntp_6 362 444 IPR003609 -
Viun6g02918 842 SUPERFAMILY alpha-D-mannose-specific plant lectins 94 203 IPR036426 -
Viun6g02918 842 ProSiteProfiles PAN/Apple domain profile. 361 445 IPR003609 -
Viun6g02918 842 PIRSF SRK 21 841 IPR024171 GO:0004674
Viun6g02918 842 CDD PAN_AP_plant 357 445 - -
Viun6g02918 842 ProSiteProfiles Bulb-type lectin domain profile. 45 166 IPR001480 -
Viun6g02918 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 599 804 - -
Viun6g02918 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 486 598 - -
Viun6g02918 842 SMART serkin_6 523 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02918 842 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 40 169 - -
Viun6g02918 842 CDD B_lectin 51 172 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02918 Viun-Chr6 32365763 32370269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02918 445 827 Receptor kinase-like Gene Family AT4G23190 46.354 3.62e-111 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun6g02918 PK_Tyr_Ser-Thr 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02918 - - vra:106774971 1609.35