Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02915 ATGGCGGCGATGTCCATCTCCGTCGTCTTTCTCTTCTCTTTCATCTCTCTCCACCATCTGTCTTCCTTGGCGGCAAGTTCAAAGATCAGTATCACGCAGGATGTCGTCATCAGGGACAGGGACCGTGAGACATTGGTGTCTGAAGAGCTCAACTTCACCATGGGTTTCTTCAATTTAGACAACTCCTCTTCCCGCTACGTCGGAATTTGGTACCACAACATTCCCGCGACACCTGTTATATGGGTCGCAAACGGCGACAACCCCATCAACGGCACAGGAGGATCCATAACTATTGCGAATGACGGGAACCTCGTGGTCCTCGATGGAGCCAGGAACCTTGTGTGGTCCACCCAAGTTTCCATCGATAGCAGCAGCAAAAACTGCTCAGCGATGCTTCGTGAAACTGGTAACCTCGTTCTCTCGTGCGACAGGAAAGACATGTGGCAAAGCTTTGAGAATCCAACGGATACATTCATGCCTGGTATGAGGGTTCCAGTGGGGGCTTCAACTGGGAAGAGTAGTGGCTATGTGTTCACTTCATGGAAATCATCAACGGATCCTTCGAAGGGAAACTACACTATGGGGGTGGATCCTAAAGGGTTACCTCAGATAGTGGTTTGGGAAGGAGACAAAAGAAGGTGGAGAACGGGGTATTGGGATGGTATAATGTTTGAAGGGGTGTCTATGGCAGGATATTATCTTTACGGTTTTACGCTGAATGGGGATGGTAAAGGAGGTAGGTATTTCATATATAACCCGTTAAACGGCACTGATATGGTGAGGTTTCAAATGGGGTGGGATGGCTATGAGAGAGAGTTCAGGTGGAATGAGGATGAGAAACGTTGGGATGTGGTTCAGAGAGGGCCTTCACATGAGTGTGAGGTTTACAACAAGTGTGGGAGTTTCGCGGCGTGTGATATGTCCCCTTCGAATTTACCTGTTTGTACTTGCATACGAGGTTTTGAACCGAAGAACAGGGATCAGTGGGATAAGGGGAACTGGTCGGGTGGGTGTACGAGGATGACTCCACTCAAGGCTCAGAGGACGAATGTTACATCCGCTGGCACTACTCAGGTTAGTGTCGGAGAGGATAAGTTCTTGGAGCGTACTTCTATGAGGTTGCCGGATTTCGCAAGTGTGGTTGGCACGAATGATTGTCAGAAAGTGTGTTTGAACGATGATTCTTGTACGGCGTATGCCAATGTTAATGGAATAGGGTGCATGGTGTGGAATGTGGATTTGGTTGACATTCAAGATTATGACAGTGGAGGAAATACACTGCATATCCGTCTCGCTCATTCTGAATTAGATGGAGGTAAAAAAAACATGATTGCGATAATATCTGCTGTTGTGGCGGGGTTAATCTGCCTAGGAATCTTTGTATGGCTGGTGTATAGATTCAAGGGAAAACTTAAAGTTCTCCCCACAGTTTCCTCAGCTTCTTGTTGCAAGAATAGTGATGTGCTGCCAGTTTATGATGGAAGCAAGAGCAGAGACATGTCAGCGGAATTTTCAGGATCAGCTGACCATAGTTTGGAGGGGAGCCAACTAAGCGGGCCAGAATTTCCCCTTTTCAATTTCAGTTGCATTTCAATAGCCACAAACAATTTCTCAGAAGAAAATAAGCTTGGAAAAGGGGGCTTTGGCCCTGTCTACAAGGGAAAGCTTCCAGGCGGAGAACAAATAGCTGTTAAGAGGCTTTCAAGACGATCTGGTCAAGGCTTAGAGGAGTTCAAGAATGAAATGATGCTGATAGCAAAACTACAGCACCGAAATCTGGTTAGACTAATGGGTTGTTCTATTCAAGGGGAAGAGAAGTTGCTGGTATATGAATACATGCCAAACAAAAGCTTGGATTGTTTTTTATTTGATCCATTCAAACAAACACAACTAGATTGGACAAGACGGTTTGAAATCATTGAAGGCATTGCAAGAGGATTGCTCTACCTGCACCGAGATTCAAGACTTAGAATAATTCATCGAGATTTAAAAGCGAGTAACATTTTGTTGGATGAAAACATGAACCCAAAGATATCAGACTTTGGATTGGCTAGGATATTTGGTGGGAACCAGAATGAAGCCAATACAAACAGAGTAGTTGGTACATATGGTTATATGGCCCCTGAATATGCAATGGAAGGTCTGTTTTCAGTCAAATCGGATGTATATAGTTTTGGTGTGTTACTACTAGAAATTTTGAGTGGCCGCAGAAACACCAGTTTTCGTCACTCCGATGACTCCAGCCTCATAGGCTATGCGTGGCATCTTTGGAATGAACAGAGAGCAATGGAGCTAATCGATCCCTGCATTCGTGATTGTAGTCCTAAAAACAGAGCTTTGAGATGCATACACATAGGGATGTTATGTGTGCAAGATTCAGCAGCTCAGAGACCAAACATGTCTGCTGTGGTGTTGATGCTGGAAAGTGAAGCAACAACTCTCCCCACGCCAACGCAACCTTTGATTACTTCCATGAGGAGATCTGATGACAGACAGTTTTACATGGATGGCCTTGATGTTTCAAATGATTTGACAGTCACAATGGTGGTAGGGAGATAG 2559 0.4521 MAAMSISVVFLFSFISLHHLSSLAASSKISITQDVVIRDRDRETLVSEELNFTMGFFNLDNSSSRYVGIWYHNIPATPVIWVANGDNPINGTGGSITIANDGNLVVLDGARNLVWSTQVSIDSSSKNCSAMLRETGNLVLSCDRKDMWQSFENPTDTFMPGMRVPVGASTGKSSGYVFTSWKSSTDPSKGNYTMGVDPKGLPQIVVWEGDKRRWRTGYWDGIMFEGVSMAGYYLYGFTLNGDGKGGRYFIYNPLNGTDMVRFQMGWDGYEREFRWNEDEKRWDVVQRGPSHECEVYNKCGSFAACDMSPSNLPVCTCIRGFEPKNRDQWDKGNWSGGCTRMTPLKAQRTNVTSAGTTQVSVGEDKFLERTSMRLPDFASVVGTNDCQKVCLNDDSCTAYANVNGIGCMVWNVDLVDIQDYDSGGNTLHIRLAHSELDGGKKNMIAIISAVVAGLICLGIFVWLVYRFKGKLKVLPTVSSASCCKNSDVLPVYDGSKSRDMSAEFSGSADHSLEGSQLSGPEFPLFNFSCISIATNNFSEENKLGKGGFGPVYKGKLPGGEQIAVKRLSRRSGQGLEEFKNEMMLIAKLQHRNLVRLMGCSIQGEEKLLVYEYMPNKSLDCFLFDPFKQTQLDWTRRFEIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDENMNPKISDFGLARIFGGNQNEANTNRVVGTYGYMAPEYAMEGLFSVKSDVYSFGVLLLEILSGRRNTSFRHSDDSSLIGYAWHLWNEQRAMELIDPCIRDCSPKNRALRCIHIGMLCVQDSAAQRPNMSAVVLMLESEATTLPTPTQPLITSMRRSDDRQFYMDGLDVSNDLTVTMVVGR 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02915 852 SMART serkin_6 537 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02915 852 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 151 - -
Viun6g02915 852 Gene3D - 29 151 IPR036426 -
Viun6g02915 852 Pfam S-locus glycoprotein domain 214 325 IPR000858 GO:0048544
Viun6g02915 852 Gene3D Transferase(Phosphotransferase) domain 1 613 817 - -
Viun6g02915 852 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 798 - -
Viun6g02915 852 PIRSF SRK 1 852 IPR024171 GO:0004674
Viun6g02915 852 CDD B_lectin 43 154 IPR001480 -
Viun6g02915 852 CDD STKc_IRAK 543 808 - -
Viun6g02915 852 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 613 815 - -
Viun6g02915 852 SMART blect_4 36 154 IPR001480 -
Viun6g02915 852 Pfam D-mannose binding lectin 79 182 IPR001480 -
Viun6g02915 852 ProSiteProfiles PAN/Apple domain profile. 361 432 IPR003609 -
Viun6g02915 852 SUPERFAMILY Protein kinase-like (PK-like) 522 836 IPR011009 -
Viun6g02915 852 ProSiteProfiles Protein kinase domain profile. 537 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02915 852 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 502 612 - -
Viun6g02915 852 SMART ntp_6 361 431 IPR003609 -
Viun6g02915 852 Gene3D Phosphorylase Kinase; domain 1 513 612 - -
Viun6g02915 852 CDD PAN_AP_plant 363 432 - -
Viun6g02915 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 658 670 IPR008271 GO:0004672|GO:0006468
Viun6g02915 852 ProSiteProfiles Bulb-type lectin domain profile. 20 153 IPR001480 -
Viun6g02915 852 Pfam Protein tyrosine and serine/threonine kinase 540 805 IPR001245 GO:0004672|GO:0006468
Viun6g02915 852 Pfam PAN-like domain 362 417 IPR003609 -
Viun6g02915 852 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 187 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02915 Viun-Chr6 32353496 32357481 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02915 436 820 Receptor kinase-like Gene Family AT4G23230 53.368 1.32e-133 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun6g02915 PK_Tyr_Ser-Thr 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02915 - - gmx:102660295 1454.5