Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02910 ATGGTTTTCCCAAGTCACACTTGTTTGCTAAATGCTTTGTTCATAGCCTTTTGCATCATTTTCCTGGGTTTGGCCTCTGCCAGGAACACCCTTACACATTCTCAATCCATAAGAGATTCAGAGATAGTAACCTCGAACGACAGTGTCTTCGTACTTGGTTTCTTCAGCCCTCAGAATTCAACGCACCGCTATGTAGGAATCTGGTACCTCTCTGATGCCAACGTCATATGGATAGCTAATAGAGACCAACCGCTCCTTGATTCTTCTGGGGTTTTGAAAATCTCCAAAGATGGTAACCTGGTTCTAGTTGATGGAAAAAACCATGTTATTTGGTCGTCCAATGTGTCAAACACTGCAACAAGGTACTGCACTGCTCAAATTTCCCGTTACGGGAAACTAGTGCTGAAAGATGACTCCACGGGACAGACCGTATGGGAGAGTTTCGAGCATCCTTGTGATGCAGCAGTGCCAACCATGAAGATAAGTGCTAACAAAGTCACGGGTGAGAAAATACAGTTTGTGTCAAGGAAAAGTGCTTCCGATCCTTCTACTGGCTATTTCTCTGCTTCCCTTGAGCGTTTGCATGCTCCAGAGGTGTTTCTATGGATTAATGGGACTCGGCCTTATTGGAGGACTGGCCCATGGAATGGTAGAATCTTCATTGGGACACCATTGATGTCAACTGGGTATCTTTATGGATGGAGTGTAGGATATGAAGGAAATGATATTGTTTATCTGACTTACAGTTTTGCTGACCCATCTTCCTTTGGAATCCTTACCCTTTCTCCAGAAGGAAAGATTAAATTGGTAAGGTATTATAACAATAAGAAAGGGTTGACTTTGGATCTGGGAATTTCTGATTGCGACGTTTATGGCACATGTGGGGCATTCGGAAGCTGTAATGGGCAGAGTTCACCAATATGTAGCTGTTTGAGTGGATTTGAGGCCAGGAATCAAGAGGAGTGGATAAGGAAAAATTGGACTAGTGGGTGTGTCAGAAAGGTGCCACTCCAGTGTGAGAGGTTGGACAATGGGAGTGAAGCTGTGCAAGAAGATAGATTTTTGAAACTTGAAACAATGAAAGTACCAGATTTTGCTGAGAGATTAGATGTGGAGGAAGGTCAGTGTGGAACACAGTGCTTGAAGAATTGCTCTTGTTTGGCGTATGCGTATGATGCTGGCATTGGATGCTTGTATTGGACTAGAGACTTAATTGACTTGCAAAAATTCCAAACTGCAGGCATTGATCTCTACATTCGTCTCGCCCATTCAGAATTTCAATCCAGTAATGCACAAGAGCATGCTAATAAAAGAAGAGGCAAGGAATTAATCATCGGAGTTACAGCGGCAACTGCTGGAACAATCATCTTTGCCATCTGTGCTTATCTAGCCATTCGCAGATTTCAGTCGCTTAAGGGAACTGCCGAAGATTCGGGAAGTGAGAGTCACAAATTGACTGCGGTCCAGAAACCAGCAAAACTGGATGAGCTACCGTTATTTGAATTTGAAGTCGTTGCAAATGCTACAAACAGTTTTCACTTAGCTAATACGCTTGGAAAGGGTGGTTTTGGTCCAGTGTACAAGGGACTACTGCCAGATGGTCAGGAAATTGCAGTGAAAAGACTCTCAAGAGCATCTGGGCAAGGTGTAGAAGAATTTATGAATGAAGTGATGGTGATTTCTAAACTTCAACATCGCAATCTTGTAAAACTTCTTGGCTGCTGCATTGAAGGAGACGAAAAGATGCTCATCTATGAATTCATGCCAAATAAAAGTTTGGATGCATTCATCTTTGATCCACTCCGGCGGAAACTTCTAGACTGGACAAAACGTTTTACTATAGTTGAAGGAGTTGCTCGGGGCTTACTCTATCTCCATAGGGATTCTAGATTAAAAATTATACATAGAGATCTGAAGGCAAGCAATATCTTACTAGATGCAGATCTGAATCCCAAAATATCAGACTTTGGTTTGGCTAGAATATACAAAGGCGAGGATGAAGTTAATACTAAGAGGGTTGTTGGAACATATGGCTACATGTCCCCTGAATATGCTATGGAAGGATTGTTTTCTGAGAAATCAGATGTGTATAGCTTTGGAGTTTTGCTATTAGAGATTATCAGTGGAAAAAGAAACACTAGTTTTCGAAATGATGACCAGTCTCTCAGCCTTATAGGATATGCGTGGAATCTATGGAACGAAGACAACATTAGCTTTTTGGTTGATCCAGAGATATCAGCTTCAGGATCTGAGAATCATATTTTGAGGTGCATCCACATAGCATTTCTTTGTGTGCAAGAAGTTGCAAAAACTAGACCAACAATGACTACTGTGCTCTCAATGCTTAACAGTGAGATTTCCCATCTACCTCCTCCTAGGCAAGTTGCATTTGTTCAGAAGCAAAGTTCATCAAGTTTAGAGTCTTCTTCTCAAGAAAATAATTGTAACTCCAACAACCATGTAACTCTTACTGATATCCAAGGAAGATAA 2490 0.4165 MVFPSHTCLLNALFIAFCIIFLGLASARNTLTHSQSIRDSEIVTSNDSVFVLGFFSPQNSTHRYVGIWYLSDANVIWIANRDQPLLDSSGVLKISKDGNLVLVDGKNHVIWSSNVSNTATRYCTAQISRYGKLVLKDDSTGQTVWESFEHPCDAAVPTMKISANKVTGEKIQFVSRKSASDPSTGYFSASLERLHAPEVFLWINGTRPYWRTGPWNGRIFIGTPLMSTGYLYGWSVGYEGNDIVYLTYSFADPSSFGILTLSPEGKIKLVRYYNNKKGLTLDLGISDCDVYGTCGAFGSCNGQSSPICSCLSGFEARNQEEWIRKNWTSGCVRKVPLQCERLDNGSEAVQEDRFLKLETMKVPDFAERLDVEEGQCGTQCLKNCSCLAYAYDAGIGCLYWTRDLIDLQKFQTAGIDLYIRLAHSEFQSSNAQEHANKRRGKELIIGVTAATAGTIIFAICAYLAIRRFQSLKGTAEDSGSESHKLTAVQKPAKLDELPLFEFEVVANATNSFHLANTLGKGGFGPVYKGLLPDGQEIAVKRLSRASGQGVEEFMNEVMVISKLQHRNLVKLLGCCIEGDEKMLIYEFMPNKSLDAFIFDPLRRKLLDWTKRFTIVEGVARGLLYLHRDSRLKIIHRDLKASNILLDADLNPKISDFGLARIYKGEDEVNTKRVVGTYGYMSPEYAMEGLFSEKSDVYSFGVLLLEIISGKRNTSFRNDDQSLSLIGYAWNLWNEDNISFLVDPEISASGSENHILRCIHIAFLCVQEVAKTRPTMTTVLSMLNSEISHLPPPRQVAFVQKQSSSSLESSSQENNCNSNNHVTLTDIQGR 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02910 829 SMART ntp_6 349 421 IPR003609 -
Viun6g02910 829 Pfam Protein tyrosine and serine/threonine kinase 513 781 IPR001245 GO:0004672|GO:0006468
Viun6g02910 829 Pfam S-locus glycoprotein domain 210 317 IPR000858 GO:0048544
Viun6g02910 829 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Viun6g02910 829 ProSiteProfiles PAN/Apple domain profile. 339 422 IPR003609 -
Viun6g02910 829 ProSiteProfiles Bulb-type lectin domain profile. 28 148 IPR001480 -
Viun6g02910 829 CDD STKc_IRAK 518 783 - -
Viun6g02910 829 Gene3D Transferase(Phosphotransferase) domain 1 588 791 - -
Viun6g02910 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 148 - -
Viun6g02910 829 CDD B_lectin 34 151 IPR001480 -
Viun6g02910 829 Pfam D-mannose binding lectin 75 177 IPR001480 -
Viun6g02910 829 Gene3D Phosphorylase Kinase; domain 1 486 587 - -
Viun6g02910 829 Pfam PAN-like domain 349 407 IPR003609 -
Viun6g02910 829 Gene3D - 24 148 IPR036426 -
Viun6g02910 829 CDD PAN_AP_plant 335 422 - -
Viun6g02910 829 SMART blect_4 34 151 IPR001480 -
Viun6g02910 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 588 790 - -
Viun6g02910 829 SMART serkin_6 512 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02910 829 ProSiteProfiles Protein kinase domain profile. 512 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02910 829 FunFam receptor-like serine/threonine-protein kinase SD1-8 484 587 - -
Viun6g02910 829 SUPERFAMILY Protein kinase-like (PK-like) 497 813 IPR011009 -
Viun6g02910 829 MobiDBLite consensus disorder prediction 801 829 - -
Viun6g02910 829 PIRSF SRK 1 829 IPR024171 GO:0004674
Viun6g02910 829 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 773 - -
Viun6g02910 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 217 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02910 Viun-Chr6 32333848 32337229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02910 435 810 Receptor kinase-like Gene Family AT4G05200 51.571 4.14e-125 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun6g02910 PK_Tyr_Ser-Thr 6.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02910 - - gmx:112998788 1483