Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02906 ATGAGGAAGTGTGATCTCTGTAACAGTCCTGCGAAGTTGTCGTGTGAATCGGATCAAGCCAGCCTCTGTTGGGAATGCGATGCTAAGGTTCACAGTGCAAACTTCCTCGTCACCAAACATCCCAGGATTCTTCTCTGCCATGTTTGTCAGTCGCTGACGGCTTGGCACGGAACCGGACCCAAGTTTGTACCCACCATCTCCGTTTGCAACACTTGTGTTAACAACAACAGTGAGAGCGGCAGCCGACAGAATCATGATGATGATGACGACGACGACGATGATGATGATGCGGATGAGATGGAGGATCATGTAGAGAACGATGAGGGTAGCGCGGAAGAAGATGATGAAGAAAATCAAGTGGTTCCATGGACATCTACACCACCACCACCACCACCACCAGCTTCCACTTCTTCAAATAGTGTTGCAACTAGTTCTACCAGGTCCTCTAACGTTGAAGAGGGGGTCTCAGATTAA 474 0.4916 MRKCDLCNSPAKLSCESDQASLCWECDAKVHSANFLVTKHPRILLCHVCQSLTAWHGTGPKFVPTISVCNTCVNNNSESGSRQNHDDDDDDDDDDDADEMEDHVENDEGSAEEDDEENQVVPWTSTPPPPPPPASTSSNSVATSSTRSSNVEEGVSD 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02906 157 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Viun6g02906 157 CDD Bbox1_BBX-like 3 45 - -
Viun6g02906 157 MobiDBLite consensus disorder prediction 76 157 - -
Viun6g02906 157 SMART bboxneu5 1 45 IPR000315 GO:0008270
Viun6g02906 157 MobiDBLite consensus disorder prediction 137 157 - -
Viun6g02906 157 MobiDBLite consensus disorder prediction 85 119 - -
Viun6g02906 157 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02906 Viun-Chr6 32299959 32300894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02906 2 131 C2C2-CO-like Transcription Factor Family AT4G27310 39.506 5.75e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun6g02906 zf-B_box 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02906 - - vum:124826682 236.498