Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02894 ATGGGGAAAAAATCGACGCCGGAGGAGGAAGGAAAAGCGGTACCGGAGCATCTGCGGTGCAACCGGTCGGACGGGCGGCAATGGCGGTGCCGGCGGAGAGTGATGGAAAACCTAAAGCTCTGCGAGATTCACTACCTGCAAGGTCAGCATCGGCAGCACAAGGAAAAGGTTCCGGAGTCTCTGAAGCTTCAGAGAAAGAGCCAAAACGACGCCGTTGAGACTCAGATTGGGGCGAAGCGGAAGGGCAACTCGAGAGAGGCATTGGTCAATAGGAGGAACCAATTGGAACTCATAAGGATGGTTCTGCAGAGAGAGGTTGAAAAAAAGAAGAAGAAGGAATCGCAATTGAATTTGCCTGTGAATTTGAATTTGCATTCCAATCACGACTTGAGGAGGGAGTTGCCGAACGGGGTTATGGCTATTGCTTCCGCTTCGACGCCCAATGTGGCTTCTTTTTCTCGTTACTTCAGGTCCAAGAATGTTGAGAGGGGTTCTGGTGGCAAGTTGCAGGTTGTGCAGTGTGGACGAAATTTGAAGAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCTTGCAGTCTTATAAGGTGCTCAAACTGCCAGAGAGAGTTTTTCTGCATGGATTGCATTAAACAAAGGTATTTTGACACTCAAAATGAGGTTAAGATGGCATGTCCAGTTTGCCGAGGAACTTGCACCTGTAAAGATTGCTTGGCAATTAAATATGAAGACAGTGAAAGTAAGGAACATTTAGCTAGTAAAAACAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGTATGCTCCTTCCTGTACTGAAACAAATAAAAGAAGATCACCACGTGGGTGTAGAAACAAAAGCGAAAATTAAAGGGAAGAGAATGAATGATACTATCATCAAACCAGTCAAGTTTGGCTGCAATGGGAAAAATTACTGCAATCACTGCAAAACACCCATTTTGGATCTTCATAAAAGCTGCCTTAGTTGTTCATACAGTCTTTGCTTAAGTTGTTCTCACGCATTAAGTCAAGGAAGAATCTCTGAGCAAAACAACTCTTGTATATCCAAGCAATCTGACAGGATAAGTGCTTGCATTTCTAGCGAAAGGTACCTATTGGATGAGAAGGCCATTTCTAATGGCAACTTAACTGATACCTCAATGTTGACTGGGTGGACAAGTTGTAATGGTGCTTCTATGGTATCATGCCCACCTACAAAGCTTGGTGATTGTGGTAATAGCCACCTTGATCTGAGCTACGTTTTTCCCTTAAGTTGGATCAAAGAAATGGAAGCAAAGGCAGAAGAAATAATTTGCAGCTATGACTTTCCTGAAACTCTGGATAAAACTTCAAGTTGCCCAATGTGTGTCGACAAAGATCATAAAACTAGCAGAAACAAGCAGCTACCGGAAGCAGCTCAGAGGGAAGATTCTAATGATAATTACTTATTTTATCCTACAGTTTTGGACATCGGTAGCAATCATTTTGAACACTTTCAGAAACATTGGGGAAGAGGCCATCCTGTAGTAGTGAGAGATGTGCTGCAAAGTACACCAAACCTTAGTTGGGATCCACTGTTCATGTTTTGCACTTATCTTGAGAGGAGCATGACAAGATATGAGAATAACAAGGACTTACTTGAAGCTTGTTTGGATTGGTTTGAGGTGGAGACAAACGTTAGGCAGTATTTTACTGGGTCTCTTAAATGTGAACCAAAGAAAAATACTTGGCATGAGATGCTGAAACTTAAAGGGTGGTTGTCTTCCCAACTATTCGAAGAACAGTTTCCAGCTCATTTTGCCGAAGTAATTGATGCTCTTCCAATTCAAGAATACATGAATCCCTCGTCAGGTCTTCTGAATTTAGCTGCAAATTTGCCCCTGGGGAGTACAAAGCATGACATAGGACCATATGTTTATATTTCATATGGCTGTGCTGATGATGAAGCCGAGTCCGTGACAAATCTCTGTTATGACTCATATGACATGGTTAACGTTATGGCACATTCCATGGAGATTCCTCTGTCCACTGATCAGCTATCTAGAATAAGCAAGTTATTGAAAAAGCACAAAGTTCTATGTAAAAAGGTGTCATCTAAAACCACTACTGAGCATGCAGAAGACTGGGAACAAAATGAAATGCGAAGTTTGGTTAGAGAAGGAACTGAATTTTTAAGGAGAGTTAGTAGAACATCATGCATCTCTAGTGAAGCCAAAACAATATGCAATCAGAATTTAGACACCAACATTTCTGGTGATAAAGAATGCCGTTCCTATTCTGAAACTCAAAAAGCACAACGCTCTTTATCTTTCCACAGCATAGTTCTAAGTTCTGAAATGTCTCCGGATCATAATCCTAGAAATTCCTTTGAAAATTTAGACAATGATAAAAGGGCGAAGCCTGCAGAGAATGCTGGTGCTCAATGGGATGTCTTTCGAAGACAAGACGTGCCAAAGCTCTTAGAATATCTTAAAATACACTCTGATGAATTTTCTTATACTAGTGAACAGCACGAGAAGATGGTTCATCCACTTCTAGATCAGAGCTTTTTTCTTGACAATACTCACAAGATGAGACTTAAGGAGGAATTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTCTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTTCGTGTGGAATTGGAATTTGTGTCCCCTGAGAATGTTGCTGAGTCTATCCAATTGATTGATGAGGTCCGGCTGCTTCCAGAAGACCACCCCGCAAAAGTAGAAAAACTGGAGGTGAAAAAAATGGCCCTTCATAGCATGAGTACAGCAATAAAAGAAATACATGAACTTACATGCAGAACATGA 2883 0.4152 MGKKSTPEEEGKAVPEHLRCNRSDGRQWRCRRRVMENLKLCEIHYLQGQHRQHKEKVPESLKLQRKSQNDAVETQIGAKRKGNSREALVNRRNQLELIRMVLQREVEKKKKKESQLNLPVNLNLHSNHDLRRELPNGVMAIASASTPNVASFSRYFRSKNVERGSGGKLQVVQCGRNLKKGRRKKCHWCQRSDSCSLIRCSNCQREFFCMDCIKQRYFDTQNEVKMACPVCRGTCTCKDCLAIKYEDSESKEHLASKNRVDRILHFHYLVCMLLPVLKQIKEDHHVGVETKAKIKGKRMNDTIIKPVKFGCNGKNYCNHCKTPILDLHKSCLSCSYSLCLSCSHALSQGRISEQNNSCISKQSDRISACISSERYLLDEKAISNGNLTDTSMLTGWTSCNGASMVSCPPTKLGDCGNSHLDLSYVFPLSWIKEMEAKAEEIICSYDFPETLDKTSSCPMCVDKDHKTSRNKQLPEAAQREDSNDNYLFYPTVLDIGSNHFEHFQKHWGRGHPVVVRDVLQSTPNLSWDPLFMFCTYLERSMTRYENNKDLLEACLDWFEVETNVRQYFTGSLKCEPKKNTWHEMLKLKGWLSSQLFEEQFPAHFAEVIDALPIQEYMNPSSGLLNLAANLPLGSTKHDIGPYVYISYGCADDEAESVTNLCYDSYDMVNVMAHSMEIPLSTDQLSRISKLLKKHKVLCKKVSSKTTTEHAEDWEQNEMRSLVREGTEFLRRVSRTSCISSEAKTICNQNLDTNISGDKECRSYSETQKAQRSLSFHSIVLSSEMSPDHNPRNSFENLDNDKRAKPAENAGAQWDVFRRQDVPKLLEYLKIHSDEFSYTSEQHEKMVHPLLDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPSGCPYQIRNPKCCVRVELEFVSPENVAESIQLIDEVRLLPEDHPAKVEKLEVKKMALHSMSTAIKEIHELTCRT 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02894 960 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 958 IPR045109 GO:0032454|GO:0033169
Viun6g02894 960 Pfam WRC 15 56 IPR014977 -
Viun6g02894 960 Gene3D Cupin 492 931 - -
Viun6g02894 960 SMART cupin_9 600 923 IPR003347 -
Viun6g02894 960 ProSiteProfiles Zinc finger RING-type profile. 186 232 IPR001841 -
Viun6g02894 960 Pfam JmjC domain, hydroxylase 810 906 IPR003347 -
Viun6g02894 960 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Viun6g02894 960 SUPERFAMILY Clavaminate synthase-like 499 947 - -
Viun6g02894 960 ProSiteProfiles JmjC domain profile. 619 923 IPR003347 -
Viun6g02894 960 Coils Coil 85 112 - -
Viun6g02894 960 MobiDBLite consensus disorder prediction 782 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02894 Viun-Chr6 32239500 32245786 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02894 11 54 GRF Transcription Factor Family AT2G22840 45.455 3.22e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun6g02894 JmjC 2.4e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02894 K15601 - gmx:100802129 1575.84