Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02893 ATGGGGAAAAAATCGACGCCGGAGGAGGAAGGAAAAGCGGTACCGGAGCATCTGCGGTGCAACCGGTCGGACGGGCGGCAATGGCGGTGCCGGCGGAGAGTGATGGAAAACCTAAAGCTCTGCGAGATTCACTACCTGCAAGGTCAGCATCGGCAGCACAAGGAAAAGGTTCCGGAGTCTCTGAAGCTTCAGAGAAAGAGCCAAAACGACGCCGTTGAGACTCAGATTGGGGCGAAGCGGAAGGGCAACTCGAGAGAGGCATTGGTCAATAGGAGGAACCAATTGGAACTCATAAGGATGGTTCTGCAGAGAGAGGTTGAAAAAAAGAAGAAGAAGGAATCGCAATTGAATTTGCCTGTGAATTTGAATTTGCATTCCAATCACGACTTGAGGAGGGAGTTGCCGAACGGGGTTATGGCTATTGCTTCCGCTTCGACGCCCAATGTGGCTTCTTTTTCTCGTTACTTCAGGTCCAAGAATGTTGAGAGGGGTTCTGGTGGCAAGTTGCAGTGTGGACGAAATTTGAAGAAGGGGAGGAGGAAGAAGTGTCATTGGTGTCAGAGAAGTGATTCTTGCAGTCTTATAAGGTGCTCAAACTGCCAGAGAGAGTTTTTCTGCATGGATTGCATTAAACAAAGGTATTTTGACACTCAAAATGAGGTTAAGATGGCATGTCCAGTTTGCCGAGGAACTTGCACCTGTAAAGATTGCTTGGCAATTAAATATGAAGACAGTGAAAGTAAGGAACATTTAGCTAGTAAAAACAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGTATGCTCCTTCCTGTACTGAAACAAATAAAAGAAGATCACCACGTGGGTGTAGAAACAAAAGCGAAAATTAAAGGGAAGAGAATGAATGATACTATCATCAAACCAGTCAAGTTTGGCTGCAATGGGAAAAATTACTGCAATCACTGCAAAACACCCATTTTGGATCTTCATAAAAGCTGCCTTAGTTGTTCATACAGTCTTTGCTTAAGTTGTTCTCACGCATTAAGTCAAGGAAGAATCTCTGAGCAAAACAACTCTTGTATATCCAAGCAATCTGACAGGATAAGTGCTTGCATTTCTAGCGAAAGGTACCTATTGGATGAGAAGGCCATTTCTAATGGCAACTTAACTGATACCTCAATGTTGACTGGGTGGACAAGTTGTAATGGTGCTTCTATGGTATCATGCCCACCTACAAAGCTTGGTGATTGTGGTAATAGCCACCTTGATCTGAGCTACGTTTTTCCCTTAAGTTGGATCAAAGAAATGGAAGCAAAGGCAGAAGAAATAATTTGCAGCTATGACTTTCCTGAAACTCTGGATAAAACTTCAAGTTGCCCAATGTGTGTCGACAAAGATCATAAAACTAGCAGAAACAAGCAGCTACCGGAAGCAGCTCAGAGGGAAGATTCTAATGATAATTACTTATTTTATCCTACAGTTTTGGACATCGGTAGCAATCATTTTGAACACTTTCAGAAACATTGGGGAAGAGGCCATCCTGTAGTAGTGAGAGATGTGCTGCAAAGTACACCAAACCTTAGTTGGGATCCACTGTTCATGTTTTGCACTTATCTTGAGAGGAGCATGACAAGATATGAGAATAACAAGGACTTACTTGAAGCTTGTTTGGATTGGTTTGAGGTGGAGACAAACGTTAGGCAGTATTTTACTGGGTCTCTTAAATGTGAACCAAAGAAAAATACTTGGCATGAGATGCTGAAACTTAAAGGGTGGTTGTCTTCCCAACTATTCGAAGAACAGTTTCCAGCTCATTTTGCCGAAGTAATTGATGCTCTTCCAATTCAAGAATACATGAATCCCTCGTCAGGTCTTCTGAATTTAGCTGCAAATTTGCCCCTGGGGAGTACAAAGCATGACATAGGACCATATGTTTATATTTCATATGGCTGTGCTGATGATGAAGCCGAGTCCGTGACAAATCTCTGTTATGACTCATATGACATGGTTAACGTTATGGCACATTCCATGGAGATTCCTCTGTCCACTGATCAGCTATCTAGAATAAGCAAGTTATTGAAAAAGCACAAAGTTCTATGTAAAAAGGTGTCATCTAAAACCACTACTGAGCATGCAGAAGACTGGGAACAAAATGAAATGCGAAGTTTGGTTAGAGAAGGAACTGAATTTTTAAGGAGAGTTAGTAGAACATCATGCATCTCTAGTGAAGCCAAAACAATATGCAATCAGAATTTAGACACCAACATTTCTGGTGATAAAGAATGCCGTTCCTATTCTGAAACTCAAAAAGCACAACGCTCTTTATCTTTCCACAGCATAGTTCTAAGTTCTGAAATGTCTCCGGATCATAATCCTAGAAATTCCTTTGAAAATTTAGACAATGATAAAAGGGCGAAGCCTGCAGAGAATGCTGGTGCTCAATGGGATGTCTTTCGAAGACAAGACGTGCCAAAGCTCTTAGAATATCTTAAAATACACTCTGATGAATTTTCTTATACTAGTGAACAGCACGAGAAGATGGTTCATCCACTTCTAGATCAGAGCTTTTTTCTTGACAATACTCACAAGATGAGACTTAAGGAGGAATTTAAAATTGAACCATGGACTTTTGAGCAACATGTTGGAGAAGCTGTCATCATTCCTTCTGGATGTCCATACCAGATTAGGAATCCTAAGTGTTGTGTTCGTGTGGAATTGGAATTTGTGTCCCCTGAGAATGTTGCTGAGTCTATCCAATTGATTGATGAGGTCCGGCTGCTTCCAGAAGACCACCCCGCAAAAGTAGAAAAACTGGAGGTGAAAAAAATGGCCCTTCATAGCATGAGTACAGCAATAAAAGAAATACATGAACTTACATGCAGAACATGA 2874 0.4148 MGKKSTPEEEGKAVPEHLRCNRSDGRQWRCRRRVMENLKLCEIHYLQGQHRQHKEKVPESLKLQRKSQNDAVETQIGAKRKGNSREALVNRRNQLELIRMVLQREVEKKKKKESQLNLPVNLNLHSNHDLRRELPNGVMAIASASTPNVASFSRYFRSKNVERGSGGKLQCGRNLKKGRRKKCHWCQRSDSCSLIRCSNCQREFFCMDCIKQRYFDTQNEVKMACPVCRGTCTCKDCLAIKYEDSESKEHLASKNRVDRILHFHYLVCMLLPVLKQIKEDHHVGVETKAKIKGKRMNDTIIKPVKFGCNGKNYCNHCKTPILDLHKSCLSCSYSLCLSCSHALSQGRISEQNNSCISKQSDRISACISSERYLLDEKAISNGNLTDTSMLTGWTSCNGASMVSCPPTKLGDCGNSHLDLSYVFPLSWIKEMEAKAEEIICSYDFPETLDKTSSCPMCVDKDHKTSRNKQLPEAAQREDSNDNYLFYPTVLDIGSNHFEHFQKHWGRGHPVVVRDVLQSTPNLSWDPLFMFCTYLERSMTRYENNKDLLEACLDWFEVETNVRQYFTGSLKCEPKKNTWHEMLKLKGWLSSQLFEEQFPAHFAEVIDALPIQEYMNPSSGLLNLAANLPLGSTKHDIGPYVYISYGCADDEAESVTNLCYDSYDMVNVMAHSMEIPLSTDQLSRISKLLKKHKVLCKKVSSKTTTEHAEDWEQNEMRSLVREGTEFLRRVSRTSCISSEAKTICNQNLDTNISGDKECRSYSETQKAQRSLSFHSIVLSSEMSPDHNPRNSFENLDNDKRAKPAENAGAQWDVFRRQDVPKLLEYLKIHSDEFSYTSEQHEKMVHPLLDQSFFLDNTHKMRLKEEFKIEPWTFEQHVGEAVIIPSGCPYQIRNPKCCVRVELEFVSPENVAESIQLIDEVRLLPEDHPAKVEKLEVKKMALHSMSTAIKEIHELTCRT 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02893 957 Pfam JmjC domain, hydroxylase 807 903 IPR003347 -
Viun6g02893 957 MobiDBLite consensus disorder prediction 779 798 - -
Viun6g02893 957 ProSiteProfiles Zinc finger RING-type profile. 183 229 IPR001841 -
Viun6g02893 957 Pfam WRC 15 56 IPR014977 -
Viun6g02893 957 SUPERFAMILY Clavaminate synthase-like 496 944 - -
Viun6g02893 957 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Viun6g02893 957 SMART cupin_9 597 920 IPR003347 -
Viun6g02893 957 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 955 IPR045109 GO:0032454|GO:0033169
Viun6g02893 957 Coils Coil 85 112 - -
Viun6g02893 957 ProSiteProfiles JmjC domain profile. 616 920 IPR003347 -
Viun6g02893 957 Gene3D Cupin 489 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02893 Viun-Chr6 32239500 32245790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02893 11 54 GRF Transcription Factor Family AT2G22840 45.455 3.30e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun6g02893 JmjC 2.3e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02893 K15601 - gmx:100799234 1570.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01587 3 10764947 10771502 Viun6g02893 6 32239500 32245790 PCT