Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02881 ATGGCTGACACCGCCGGCTCCGGTCACCGGCGGGTTATGACGCTCATCTCTTCCCTTATCTCCCTCTCTCTTTCCATCAGAGTCTTCGCCGGAAAGTGGCAACTTATTCGGAGTAGGCTGGAGGAGCTCTGTTCGGCATTCGTTGCCGGCGACTCCGCTTCACTGTCAAGCGAGATCCCGGCGATAACAGGCACGGTGGAGGAGTGCCACGAGCTGGCAAGGCGGTGCTTGGATCTGTCCTACAGCGGGAAGCTCTTGATGCAGAGCGACTTGGACGTGACTCTGGGGAAGTTGGAAGCGCACGTGAAGAAGCTATCTGAGATATTCAAGAAGCGTGTGTCGATGCATGGCTACGCTGTTGTGGTTTCAAGGCCTGGTTTTGGAGCTTGCAAAGATGACATGAGGTTCTACTTAAGGGACTTAATGACTCGAATGAAGGTTGGTGATTTGGGTATCAGGAAGCAAGCGTTGATGAATTTGCATGAAGTTGTTGTGGAGGATGATAAGTATGTGAAGTTGGTTGTTGAGGCTTCTGAGTTTGTTCACTTGTTGGTGGATTTTCTTGGTTGTGATGAGGTTGAGATTGTTGAGGAGGCTGCCAATGTTGTTTCTGTCGTTGCGGGTTTTGATTATTATAAAGGGGTTTTGGTTGGTGCTGGAGTTATTGGGCCTTTAATTCGGATTTTGGAATGTGGGAGTGAAGTGGGAAAGATTGCTGCTGTGAGATGTTTGTGTAGACTGACTGAGAATTCGGATAATGCTTGGAGTGTTTCAGCTCATGGAGGTGTAACAGTCTTGTTGAGGATTTGTGAGAGCGGAGAGTGTAAAGGAGAATTGATTGGTCCTGCTTGTGGGGTGTTGCGGAATCTTTGTGGGGTTGAGGAAATCAAGAGGTTTATGGTTGAGGAGGGTGTGGTTTCCACGTTTTTGAAGCTTGTAAGGTCTAAGGATGAAGTAGTTCAAGTTAGTTCTATCGAGTTGACTCAAAACATTGCCTCTGGGGATGAGTTGGTTAGGCAGATGGTGGTTAGAGAAGGAGGGGTTCGTGTTCTTCTGCGTGTTTTGGATCCATTGTGGACGTGCTCGTCTAAAACAAGAGAGGTTGTGATGAGGGGCATTGAGAATTTGTGTTTTTCTTCGACCAGTTGTGTTAGTCTTTTGCTGAGTTATGGCTTTGTGGATCAGTTGATGTATTATGTTAGAAATGGGGAGGTATCGATTCAGGAGTTGGGGCTGAAGGTAGCGTTCAGATTGTGTGAAGCATCGGAGGAGGCCAAGAAGGCATTAGGTGATGCCGGCTTCATGGCCGAGCTTGTGAAGTTTCTAAATGCGGAATCGTTTGAAGTTCGTGAAATGGCAGCAGAGGCACTCTCTGGCATGGTTACGGTGGCTAAAAATAGGAAGAGATTTGTTCAGGATGATCAAAACATTGCCCTTCTTCTGCAATTGCTGGATCCAGGGGAGGGAAATTCTGGTAACAAAAAGTTGTTGATCTCCATCTTGATGTCACTAACAAGCTGCAACAGTGGCAGGAAGAAAATCGTGAGCTCCGGGTATGCCAAGAACATAGAGAGGCTTGCAGAAGCTGAGGTTTCTTCTGATGCCAAGAGGCTCGTCAGGAAGCTATCCACAAACCGGTTCCGCAGTATGTTGAGTGGAATCTGGCACTCTTGA 1674 0.4767 MADTAGSGHRRVMTLISSLISLSLSIRVFAGKWQLIRSRLEELCSAFVAGDSASLSSEIPAITGTVEECHELARRCLDLSYSGKLLMQSDLDVTLGKLEAHVKKLSEIFKKRVSMHGYAVVVSRPGFGACKDDMRFYLRDLMTRMKVGDLGIRKQALMNLHEVVVEDDKYVKLVVEASEFVHLLVDFLGCDEVEIVEEAANVVSVVAGFDYYKGVLVGAGVIGPLIRILECGSEVGKIAAVRCLCRLTENSDNAWSVSAHGGVTVLLRICESGECKGELIGPACGVLRNLCGVEEIKRFMVEEGVVSTFLKLVRSKDEVVQVSSIELTQNIASGDELVRQMVVREGGVRVLLRVLDPLWTCSSKTREVVMRGIENLCFSSTSCVSLLLSYGFVDQLMYYVRNGEVSIQELGLKVAFRLCEASEEAKKALGDAGFMAELVKFLNAESFEVREMAAEALSGMVTVAKNRKRFVQDDQNIALLLQLLDPGEGNSGNKKLLISILMSLTSCNSGRKKIVSSGYAKNIERLAEAEVSSDAKRLVRKLSTNRFRSMLSGIWHS 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02881 557 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 261 305 IPR000225 GO:0005515
Viun6g02881 557 SUPERFAMILY ARM repeat 139 538 IPR016024 -
Viun6g02881 557 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 9 556 - -
Viun6g02881 557 SMART arm_5 335 378 IPR000225 GO:0005515
Viun6g02881 557 SMART arm_5 250 292 IPR000225 GO:0005515
Viun6g02881 557 SMART arm_5 167 208 IPR000225 GO:0005515
Viun6g02881 557 SMART arm_5 293 333 IPR000225 GO:0005515
Viun6g02881 557 SMART arm_5 422 462 IPR000225 GO:0005515
Viun6g02881 557 SMART arm_5 209 249 IPR000225 GO:0005515
Viun6g02881 557 Gene3D - 138 546 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02881 Viun-Chr6 32191486 32193440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02881 109 409 U-box Gene Family AT2G23140 23.432 3.28e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02881 - - gmx:100783537 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01582 3 10673732 10676327 Viun6g02881 6 32191486 32193440 PCT