Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02880 ATGAACCGTCATGACACCATCTTCGTAGCCCTAAAAGCGCATTCCCATTTTCTTGGCTCTCGTCTTCCATCCCCTCTCTCTCTTCTTTCCCCGCAGTTTTGGACATACATTTCTTGTTACGGAAAAAAAAAAATGTCCAGAGTTGCTTTCTTGCAGCGTCTCTATGGCGCTTTCCGTGAAAACCAGTCGCGTCTTAAGCTTGTGCTGATTTGCACCGCCGTAAGTGGTGGTGGTCTCTTGGCTTATGGTGAGAGTGTTGCACCTGAGGAGACAATTACAGAGAAGAAAAAAGTGGTGGTTCTGGGAACTGGTTGGGCGGCCACAAGTTTCTTGAAGAATCTGAATAATCCGAAATACGAGGTTCAAGTAGTTTCGCCGCGTAACTACTTTGCTTTCACTCCTTTGCTGCCTAGCGTTACTTGCGGCACGGTTGAAGCACGTAGCATTGTTGAACCCATTCGCAATATTTTTAAGAAGAAAAAGGTGGATGTACAATTCAGTGAAGCAGAATGTTACAAGATTGACGCAGAAAATAAGAAAGTTTACTGTCGATCAAGTTTGAACAATAATTTGAATGGGAAAGAAGAATTCGTGGTGGATTATGACTACTTAATAATCGGCGTTGGCGCTAATGTCAACACATTTAATACTCCAGGAGTTATGGAGAATTGCCATTTTTTGAAGGAAGTTGAAGATGCTCAAAAGATTAGAAGAACAGTTATTGACTGCTTCGAGAGAGCAAATTTGCCGGATGTAAGTGAAGATGAGAAGAAGAGAATTCTGCATTTTGCTATTGTTGGAGGTGGACCAACTGGAGTGGAGTTTGCAGCCTCACTTCATGATTTTGTCAATGAGGATTTGGTCCGTTTGTATCCTGGGATAAAAGATTTGGTTAAAATTACTCTTCTGGAGGCCGCAGATCATATCTTGGGCATGTTTGACAAGAGAATCACTGTTTTTGCTGAAGACAAGTTTCGAAGAGATGGGATTGATGTAAAGACAGGATCCATGGTTGTTAAGGTATCTGAGAAAGAAATTTCCACCAAAGAACTGAAAAGTGGAGGGGAGATTAAGACAATACCGTATGGAATGGCTGTCTGGTCAACTGGTATCGGCACTCGTCCGTTTATTAAAGATTTTATGACTCAAATCGGCCAGGCTAGCAGGCGTGCTCTAGCTACTGACGAATGGTTGAGAGTTGAAGGGTGCAACAATGTCTATGCGCTCGGTGATTGTGCTACGATAAACCAACGAAAAGTCATGGATGATATTACAGCGATCTTTAAGAAGGCTGACAAAGACAATTCAGGAACATTGACGGTTAAAGAATTTCAAGAGGCCATGAAAGACATCAGTGAAAGATACCCTCAGGTTGAGCTATATCTGAAGAATAAACAGATGCGGAACATTGCTGATTTATTGAAGGAAGTCAAGGGGGATGATAAAAAGAAATCAATTGAATTGAATATCGAAGAACTTACAACGGCACTTTCCAAAGTGGATTCTCAAATGAAATTTCTTCCTGCTACAGCCCAGGTTGCATCTCAGCAAGGCACTTACCTGGCCACGTGTTTTAACCGAATGGAAGATTGTGAAAAAAATCCTGAAGGTCCTCTCAGGTTCAGGGGAGAAGGTCGCCATCGGTTCAAACCCTTTAGGTACAAGCATTTGGGTCAATTCGCTCCTTTGGGAGGAGAGAAGACAGCAGCCCAGCTTCCTGGAGATTGGGTTTCAATTGGTCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGCAAGCAAGTAAGCTGGCGCACAAAAGCATTGGTAGTTTCAGACTGGACAAGACGTTTTATTTTTGGAAGGGACTCGAGTAGCATATGA 1866 0.4271 MNRHDTIFVALKAHSHFLGSRLPSPLSLLSPQFWTYISCYGKKKMSRVAFLQRLYGAFRENQSRLKLVLICTAVSGGGLLAYGESVAPEETITEKKKVVVLGTGWAATSFLKNLNNPKYEVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIFKKKKVDVQFSEAECYKIDAENKKVYCRSSLNNNLNGKEEFVVDYDYLIIGVGANVNTFNTPGVMENCHFLKEVEDAQKIRRTVIDCFERANLPDVSEDEKKRILHFAIVGGGPTGVEFAASLHDFVNEDLVRLYPGIKDLVKITLLEAADHILGMFDKRITVFAEDKFRRDGIDVKTGSMVVKVSEKEISTKELKSGGEIKTIPYGMAVWSTGIGTRPFIKDFMTQIGQASRRALATDEWLRVEGCNNVYALGDCATINQRKVMDDITAIFKKADKDNSGTLTVKEFQEAMKDISERYPQVELYLKNKQMRNIADLLKEVKGDDKKKSIELNIEELTTALSKVDSQMKFLPATAQVASQQGTYLATCFNRMEDCEKNPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEKTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTKALVVSDWTRRFIFGRDSSSI 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02880 621 Pfam EF hand 424 450 IPR002048 GO:0005509
Viun6g02880 621 SUPERFAMILY FAD/NAD(P)-binding domain 262 416 IPR036188 -
Viun6g02880 621 ProSitePatterns EF-hand calcium-binding domain. 432 444 IPR018247 -
Viun6g02880 621 Coils Coil 483 503 - -
Viun6g02880 621 CDD EFh 423 498 IPR002048 GO:0005509
Viun6g02880 621 PANTHER NADH DEHYDROGENASE 89 621 IPR045024 GO:0003954|GO:0006116
Viun6g02880 621 ProSiteProfiles EF-hand calcium-binding domain profile. 419 454 IPR002048 GO:0005509
Viun6g02880 621 Gene3D - 86 467 - -
Viun6g02880 621 Gene3D - 468 620 - -
Viun6g02880 621 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 465 620 - -
Viun6g02880 621 SUPERFAMILY EF-hand 412 508 IPR011992 -
Viun6g02880 621 Pfam Pyridine nucleotide-disulphide oxidoreductase 96 421 IPR023753 GO:0016491
Viun6g02880 621 SMART efh_1 423 451 IPR002048 GO:0005509
Viun6g02880 621 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 86 448 - -
Viun6g02880 621 SUPERFAMILY FAD/NAD(P)-binding domain 95 314 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02880 Viun-Chr6 32178971 32184437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02880 45 621 Chloroplast and Mitochondria Gene Families AT4G21490 72.899 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02880 K03885 - gmx:100797657 1078.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01580 3 10616354 10621246 Viun6g02880 6 32178971 32184437 PCT