Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02847 ATGGGAGCAGAGACGATGAAGGGATGGGGCACCTGGGAGGAGCTCCTCCTTGGTGGGGCCATTCTCCGTCATGGAACCAAAGATTGGAACATTGTTGCCACCGAGCTCCGAGCCCGAACAGTTTTTCCTTACACCATTACTCCTGAGGTATGCAAAGACAAATATGAAGATCTGCTACAACGATATTCTGGAAACAAGGCTTGGTATGAGGAGCTTAGGAAGACTAGAGTAGCAGAGTTGAAGAGATCTCTAGAGATATCTGAAGATTCAATTGGGTCTCTAGAATCTAAGCTTGAAAGCCTGAAGGGTGGTGAGAATGATAAAAGAGATGGTTGTGATGTTGATAATGTTGATAATGGATCAGTTGGTCCAAAGTTGCATGTAGCTTCACATAAACTAGAAAGAGTTGAATCTTCCACCAAAGACAACACATCAAAAGATGGACTTTCTGCTGGGAGTTTCACTCATCAAACTCTTCCATCTGTGCCTGTTCAACATTTCGAGACTAAGCCTCACACACTTTTGAATGTAGATAAGTTAGCATATGCTGTATACGAAGGAGAAGGTGGGAGTTTTAAGAAACGAAGAGGGAAGAGGAAAAGGAAGGATTGTGGCAAAAATACGAAGGAACCAAGCATGGCAGAGAGTGTTTTGTTAGATTCAGTTGATGTCATGTCATGGTGTAAAGAAAGTTCTACCAGTAACTACAGTGAAGTTGCCAAATCAAGCGGTGTAAATTATCAGAATAGGAACTTGAAAAAGAGTAGTAGGGTGGAAGACATGATGAAGATTTTGGATTCTATTTTTGAAACCAAATGTGCTTCTGCATTTCGTCGTAGACTTGATAGTCAGAAGAGAGGGAGGTACAAGAAAATGATTCGACAACACATGGATTTTGACACCATAAGGTCGAGAATCAGCGACCAAACAATTAGATCAAGTGTAGAACTTTTTCGAGACATGCTCCTACTCACTAACAATGCTTTAGTCTTCTACTCCAAGAGCACACGTGAATACAAATCTGCTCTGTTACTAAGAGACATAGTAACAAAAAAAATAAAGGAAAGTTGTTGGAAGGATACGAATAACAAAGTCACCACCACCAGTGAAGTTACCAATGCAGCTATTAAATTACCTATACATAATCTTCATGTGAAACCAAGAAGCATACGATCTGGTAATAGAAAAATAATAGCAAAAGCTTGTGGTGGAAATGGAAATAACTCTATATCTGGGGTTTCACATGCTACCAAAAAACCTACTAAAGTTGATTCTCCATCCTCTGTGGAATCCTTGAGTGTGAAGAAGAAAGGTTTTGGTCGACCAAAAAAGGTTGGACGAGGATCTGCTAGTCAAAAGCCTGCAGTACCAATGAAGGGAAAGAAAAAAGTTAGAACAACCAAGTAA 1407 0.4023 MGAETMKGWGTWEELLLGGAILRHGTKDWNIVATELRARTVFPYTITPEVCKDKYEDLLQRYSGNKAWYEELRKTRVAELKRSLEISEDSIGSLESKLESLKGGENDKRDGCDVDNVDNGSVGPKLHVASHKLERVESSTKDNTSKDGLSAGSFTHQTLPSVPVQHFETKPHTLLNVDKLAYAVYEGEGGSFKKRRGKRKRKDCGKNTKEPSMAESVLLDSVDVMSWCKESSTSNYSEVAKSSGVNYQNRNLKKSSRVEDMMKILDSIFETKCASAFRRRLDSQKRGRYKKMIRQHMDFDTIRSRISDQTIRSSVELFRDMLLLTNNALVFYSKSTREYKSALLLRDIVTKKIKESCWKDTNNKVTTTSEVTNAAIKLPIHNLHVKPRSIRSGNRKIIAKACGGNGNNSISGVSHATKKPTKVDSPSSVESLSVKKKGFGRPKKVGRGSASQKPAVPMKGKKKVRTTK 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02847 468 Coils Coil 77 97 - -
Viun6g02847 468 MobiDBLite consensus disorder prediction 98 154 - -
Viun6g02847 468 SUPERFAMILY Bromodomain 258 356 IPR036427 GO:0005515
Viun6g02847 468 Pfam Bromodomain 262 342 IPR001487 GO:0005515
Viun6g02847 468 MobiDBLite consensus disorder prediction 408 432 - -
Viun6g02847 468 CDD Bromodomain 259 353 - -
Viun6g02847 468 Gene3D - 247 364 IPR036427 GO:0005515
Viun6g02847 468 MobiDBLite consensus disorder prediction 100 115 - -
Viun6g02847 468 SMART bromo_6 254 358 IPR001487 GO:0005515
Viun6g02847 468 MobiDBLite consensus disorder prediction 128 142 - -
Viun6g02847 468 MobiDBLite consensus disorder prediction 408 468 - -
Viun6g02847 468 ProSiteProfiles Bromodomain profile. 269 339 IPR001487 GO:0005515
Viun6g02847 468 CDD SANT 9 59 IPR001005 -
Viun6g02847 468 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 180 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02847 Viun-Chr6 32013965 32018901 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun6g02847 Bromodomain 5.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02847 - - pvu:PHAVU_006G190000g 659.833