Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02844 ATGATGCTTCGTTTACTTCTTAGGGAAGGTACAATCAAACCGAAGAAAAATAGCAAGAAAATAATTGGTGCAATCAATAGTCTATATGTTTCTCTGGGGTCGCCACCACTTCAAGGGTGGAAATCCGTGGGAGGAGATCCATGTTTAGAACTGTGGCAAGGTGTCGCTTGTGTCTTCTCCAACATAACTGCTATACACCTTGGAAGCATGAATTTGGGTGGACAGCTGGGCAGCAATTTGAATTTCCCATCCATTTTAGAACTGGATCTTAGTAACAACCACATTGAAGGGCCTATTCCATTTACTTTGCCCCCTACTCTGCGGAGCTTGTCTCTCTCAGGAAATCGATTAAATGGAAGCATTCCAGATGCCTTGTCCTTATTAACTCAGCTGTCAAACTTGGATTTGTCGAATAATAACTTGAGTGGTCAGCTGCCTTCCTCAACAGGGAGTTTATCATCTCTTACCACATTGCACTTGCAGAATAATCAACTTTCCGGGACCCTTTACGTGTTGCAAGACCTGCCTCTTCAAGACCTGGATATAGAGAACAATTTATTCTCTGGGCCAATTCCTCCAAAATTGTTGTCTATCCCTAATTTCAGTAAAAATGGGAATCCCTTTAATACTACTATCATTCCATCACCTCCTCTTGCAGCCCCTGCACCAGTAGCTATGGTTCCATCCCCCCGAGAATCGCCTTGGACAGTGGCATATGGTCCTTCTGCCCTGACAGCACGAGTGCCTGCAAGTGCTAGGAGGTCTTTTATGGCTAAGAGTATCATCTGGATTGCTGGTGCAGGTCTTTTTGTATTCATTGTTTTGGGAGTTTGTCTTCTAATGTTGTGTTGCATTAAGAGGAGGCCGCAGAAGAAAAATGCTAAGAAACTTGATGATGTGGGCGTGTTTGGGGGACCTTTGAATAAATCTGCATGCAATGATTATGTTTTTGGAGCAACTAATCAAGAGGAGAAGGGTAAATGTGAAGTACCAAATAGGAGCACAAATTCGAGTCCTAAGGTTCAAGAGGAAGGAGACATATATGTGAAAGTAGTATCTGCAACTTCAGAATGCAATAGTGGTCATCAATCAATGAACACTGGAGGGGGTTCCAAACTTTCACCCCTGCAGCCACCACCAAAACACTCTTTCCCAACCATTTCTGGTGAGAAGATCACTATTAATCCGGCTATAACTACCAAAGAAGCTGAAAAACAAGTTATGACAAATTCCATCAAAGTTTATACTGTTGCATTGCTTCAACAATATACAAATAACTTTTCCCAAGAAAACTGCATTGGGGAAGGCACACTAGGGCCTGTTTATCGGGCTGAACTACCTGATGGAAAGCTATTGGCAGTGAGGAAACTGGATGCTACTGCTTCGATGGGGCAGAGTCATGAGCAATTTCTTCAATTGGTATCCAGCATCTCCAATATTCAGCATGCAAATATTGCAAGACTTGTAGGCTACTGTGTTGAACATAGCCAACGACTACTTGTGTACGAGTATTGCAGTAATGGGACCCTACATAATGTATTGCATGGGGATGATAATCAGCGAATCAAACTTCCATGGAATGCACGCATTCGAGTGGCACTCGGAGCTGCCAGAGCTTTAGAGTACCTGCACGAGAACTTTAGGCCACCTATTGTGCATCGAAATTTTAGGTCTAATAATGTTCTTCTGAATGACAATTTGGAAGTGTGCATATCTGATTGTGGATTAGGGCCATTGTTGTCATCTGGCTCTACGGGTCAGTTATCAGGGCGCCTCCTTACTGCTTATGGTTACAGTGCCCCAGAATTTGAGTCTGGAAGTTATACACAGCAAAGTGATGTCTTCAGTTTTGGTGTTGTAATGTTAGAACTCCTTACTGGACGAAAATCTCATGACAAGTCACGGCCTCGTGCAGAGCAATTTTTAGTCAGATGGGCTGTCCCTCAACTCCATGACATTGATACATTGTCAAAAATGGTTGATCCCTGCTTGAGCGGAGCCTATCCTATGAAGTCCTTGTCGCGTTTTGCAGATATTGTTTCTTCATGTCTACAGCGTGAACCTGAGTTCCGACCTGCAATGTCGGAAATTGTTCAAGATCTCTTGCGAATGATGTAA 2118 0.432 MMLRLLLREGTIKPKKNSKKIIGAINSLYVSLGSPPLQGWKSVGGDPCLELWQGVACVFSNITAIHLGSMNLGGQLGSNLNFPSILELDLSNNHIEGPIPFTLPPTLRSLSLSGNRLNGSIPDALSLLTQLSNLDLSNNNLSGQLPSSTGSLSSLTTLHLQNNQLSGTLYVLQDLPLQDLDIENNLFSGPIPPKLLSIPNFSKNGNPFNTTIIPSPPLAAPAPVAMVPSPRESPWTVAYGPSALTARVPASARRSFMAKSIIWIAGAGLFVFIVLGVCLLMLCCIKRRPQKKNAKKLDDVGVFGGPLNKSACNDYVFGATNQEEKGKCEVPNRSTNSSPKVQEEGDIYVKVVSATSECNSGHQSMNTGGGSKLSPLQPPPKHSFPTISGEKITINPAITTKEAEKQVMTNSIKVYTVALLQQYTNNFSQENCIGEGTLGPVYRAELPDGKLLAVRKLDATASMGQSHEQFLQLVSSISNIQHANIARLVGYCVEHSQRLLVYEYCSNGTLHNVLHGDDNQRIKLPWNARIRVALGAARALEYLHENFRPPIVHRNFRSNNVLLNDNLEVCISDCGLGPLLSSGSTGQLSGRLLTAYGYSAPEFESGSYTQQSDVFSFGVVMLELLTGRKSHDKSRPRAEQFLVRWAVPQLHDIDTLSKMVDPCLSGAYPMKSLSRFADIVSSCLQREPEFRPAMSEIVQDLLRMM 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02844 705 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 32 703 IPR046959 -
Viun6g02844 705 Pfam Protein tyrosine and serine/threonine kinase 430 701 IPR001245 GO:0004672|GO:0006468
Viun6g02844 705 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 18 129 - -
Viun6g02844 705 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 394 504 - -
Viun6g02844 705 SUPERFAMILY L domain-like 52 215 - -
Viun6g02844 705 PRINTS Leucine-rich repeat signature 131 144 - -
Viun6g02844 705 PRINTS Leucine-rich repeat signature 152 165 - -
Viun6g02844 705 Gene3D Transferase(Phosphotransferase) domain 1 505 705 - -
Viun6g02844 705 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 130 219 - -
Viun6g02844 705 SUPERFAMILY Protein kinase-like (PK-like) 407 701 IPR011009 -
Viun6g02844 705 Gene3D Ribonuclease Inhibitor 20 216 IPR032675 -
Viun6g02844 705 MobiDBLite consensus disorder prediction 360 388 - -
Viun6g02844 705 ProSiteProfiles Leucine-rich repeat profile. 106 128 IPR001611 GO:0005515
Viun6g02844 705 Gene3D Phosphorylase Kinase; domain 1 390 504 - -
Viun6g02844 705 ProSiteProfiles Protein kinase domain profile. 427 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02844 705 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 505 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02844 Viun-Chr6 31993133 31999629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02844 22 705 Strubbelig Receptor Gene Family AT4G03390 50.817 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Viun6g02844 PK_Tyr_Ser-Thr 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02844 - - gmx:100793423 1105.51