Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02843 ATGACAAGCACCAAACTGGAGTTGCATGTCGGGATTTTTGTCACCTGCGTCGTGATTCTCGCAGGGACCTTCTGTGTTGGAGATACTGATGTGGTTGATGTTGGTGCAATCAATAGTCTATATGTTTCTCTGGGGTCGCCACCACTTCAAGGGTGGAAATCCGTGGGAGGAGATCCATGTTTAGAACTGTGGCAAGGTGTCGCTTGTGTCTTCTCCAACATAACTGCTATACACCTTGGAAGCATGAATTTGGGTGGACAGCTGGGCAGCAATTTGAATTTCCCATCCATTTTAGAACTGGATCTTAGTAACAACCACATTGAAGGGCCTATTCCATTTACTTTGCCCCCTACTCTGCGGAGCTTGTCTCTCTCAGGAAATCGATTAAATGGAAGCATTCCAGATGCCTTGTCCTTATTAACTCAGCTGTCAAACTTGGATTTGTCGAATAATAACTTGAGTGGTCAGCTGCCTTCCTCAACAGGGAGTTTATCATCTCTTACCACATTGCACTTGCAGAATAATCAACTTTCCGGGACCCTTTACGTGTTGCAAGACCTGCCTCTTCAAGACCTGGATATAGAGAACAATTTATTCTCTGGGCCAATTCCTCCAAAATTGTTGTCTATCCCTAATTTCAGTAAAAATGGGAATCCCTTTAATACTACTATCATTCCATCACCTCCTCTTGCAGCCCCTGCACCAGTAGCTATGGTTCCATCCCCCCGAGAATCGCCTTGGACAGTGGCATATGGTCCTTCTGCCCTGACAGCACGAGTGCCTGCAAGTGCTAGGAGGTCTTTTATGGCTAAGAGTATCATCTGGATTGCTGGTGCAGGTCTTTTTGTATTCATTGTTTTGGGAGTTTGTCTTCTAATGTTGTGTTGCATTAAGAGGAGGCCGCAGAAGAAAAATGCTAAGAAACTTGATGATGTGGGCGTGTTTGGGGGACCTTTGAATAAATCTGCATGCAATGATTATGTTTTTGGAGCAACTAATCAAGAGGAGAAGGGTAAATGTGAAGTACCAAATAGGAGCACAAATTCGAGTCCTAAGGTTCAAGAGGAAGGAGACATATATGTGAAAGTAGTATCTGCAACTTCAGAATGCAATAGTGGTCATCAATCAATGAACACTGGAGGGGGTTCCAAACTTTCACCCCTGCAGCCACCACCAAAACACTCTTTCCCAACCATTTCTGGTGAGAAGATCACTATTAATCCGGCTATAACTACCAAAGAAGCTGAAAAACAAGTTATGACAAATTCCATCAAAGTTTATACTGTTGCATTGCTTCAACAATATACAAATAACTTTTCCCAAGAAAACTGCATTGGGGAAGGCACACTAGGGCCTGTTTATCGGGCTGAACTACCTGATGGAAAGCTATTGGCAGTGAGGAAACTGGATGCTACTGCTTCGATGGGGCAGAGTCATGAGCAATTTCTTCAATTGGTATCCAGCATCTCCAATATTCAGCATGCAAATATTGCAAGACTTGTAGGCTACTGTGTTGAACATAGCCAACGACTACTTGTGTACGAGTATTGCAGTAATGGGACCCTACATAATGTATTGCATGGGGATGATAATCAGCGAATCAAACTTCCATGGAATGCACGCATTCGAGTGGCACTCGGAGCTGCCAGAGCTTTAGAGTACCTGCACGAGAACTTTAGGCCACCTATTGTGCATCGAAATTTTAGGTCTAATAATGTTCTTCTGAATGACAATTTGGAAGTGTGCATATCTGATTGTGGATTAGGGCCATTGTTGTCATCTGGCTCTACGGGTCAGTTATCAGGGCGCCTCCTTACTGCTTATGGTTACAGTGCCCCAGAATTTGAGTCTGGAAGTTATACACAGCAAAGTGATGTCTTCAGTTTTGGTGTTGTAATGTTAGAACTCCTTACTGGACGAAAATCTCATGACAAGTCACGGCCTCGTGCAGAGCAATTTTTAGTCAGATGGGCTGTCCCTCAACTCCATGACATTGATACATTGTCAAAAATGGTTGATCCCTGCTTGAGCGGAGCCTATCCTATGAAGTCCTTGTCGCGTTTTGCAGATATTGTTTCTTCATGTCTACAGCGTGAACCTGAGTTCCGACCTGCAATGTCGGAAATTGTTCAAGATCTCTTGCGAATGATGTAA 2154 0.4378 MTSTKLELHVGIFVTCVVILAGTFCVGDTDVVDVGAINSLYVSLGSPPLQGWKSVGGDPCLELWQGVACVFSNITAIHLGSMNLGGQLGSNLNFPSILELDLSNNHIEGPIPFTLPPTLRSLSLSGNRLNGSIPDALSLLTQLSNLDLSNNNLSGQLPSSTGSLSSLTTLHLQNNQLSGTLYVLQDLPLQDLDIENNLFSGPIPPKLLSIPNFSKNGNPFNTTIIPSPPLAAPAPVAMVPSPRESPWTVAYGPSALTARVPASARRSFMAKSIIWIAGAGLFVFIVLGVCLLMLCCIKRRPQKKNAKKLDDVGVFGGPLNKSACNDYVFGATNQEEKGKCEVPNRSTNSSPKVQEEGDIYVKVVSATSECNSGHQSMNTGGGSKLSPLQPPPKHSFPTISGEKITINPAITTKEAEKQVMTNSIKVYTVALLQQYTNNFSQENCIGEGTLGPVYRAELPDGKLLAVRKLDATASMGQSHEQFLQLVSSISNIQHANIARLVGYCVEHSQRLLVYEYCSNGTLHNVLHGDDNQRIKLPWNARIRVALGAARALEYLHENFRPPIVHRNFRSNNVLLNDNLEVCISDCGLGPLLSSGSTGQLSGRLLTAYGYSAPEFESGSYTQQSDVFSFGVVMLELLTGRKSHDKSRPRAEQFLVRWAVPQLHDIDTLSKMVDPCLSGAYPMKSLSRFADIVSSCLQREPEFRPAMSEIVQDLLRMM 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02843 717 SUPERFAMILY L domain-like 64 227 - -
Viun6g02843 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 143 231 - -
Viun6g02843 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 142 - -
Viun6g02843 717 PRINTS Leucine-rich repeat signature 143 156 - -
Viun6g02843 717 PRINTS Leucine-rich repeat signature 164 177 - -
Viun6g02843 717 MobiDBLite consensus disorder prediction 372 400 - -
Viun6g02843 717 Gene3D Ribonuclease Inhibitor 36 228 IPR032675 -
Viun6g02843 717 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 517 717 - -
Viun6g02843 717 Gene3D Phosphorylase Kinase; domain 1 402 516 - -
Viun6g02843 717 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 20 715 IPR046959 -
Viun6g02843 717 Pfam Protein tyrosine and serine/threonine kinase 442 713 IPR001245 GO:0004672|GO:0006468
Viun6g02843 717 ProSiteProfiles Protein kinase domain profile. 439 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02843 717 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 406 516 - -
Viun6g02843 717 ProSiteProfiles Leucine-rich repeat profile. 118 140 IPR001611 GO:0005515
Viun6g02843 717 Gene3D Transferase(Phosphotransferase) domain 1 517 717 - -
Viun6g02843 717 SUPERFAMILY Protein kinase-like (PK-like) 419 713 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02843 Viun-Chr6 31992562 31999629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02843 23 717 Strubbelig Receptor Gene Family AT4G03390 50.470 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Viun6g02843 PK_Tyr_Ser-Thr 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02843 - - gmx:100793423 1162.9