Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02842 ATGACAAGCACCAAACTGGAGTTGCATGTCGGGATTTTTGTCACCTGCGTCGTGATTCTCGCAGGGACCTTCTGTGTTGGAGATACTGATGTGGTTGATGTTGGTGCAATCAATAGTCTATATGTTTCTCTGGGGTCGCCACCACTTCAAGGGTGGAAATCCGTGGGAGGAGATCCATGTTTAGAACTGTGGCAAGGTGTCGCTTGTGTCTTCTCCAACATAACTGCTATACACCTTGGAAGCATGAATTTGGGTGGACAGCTGGGCAGCAATTTGAATTTCCCATCCATTTTAGAACTGGATCTTAGTAACAACCACATTGAAGGGCCTATTCCATTTACTTTGCCCCCTACTCTGCGGAGCTTGTCTCTCTCAGGAAATCGATTAAATGGAAGCATTCCAGATGCCTTGTCCTTATTAACTCAGCTGTCAAACTTGGATTTGTCGAATAATAACTTGAGTGGTCAGCTGCCTTCCTCAACAGGGAGTTTATCATCTCTTACCACATTGCACTTGCAGAATAATCAACTTTCCGGGACCCTTTACGTGTTGCAAGACCTGCCTCTTCAAGACCTGGATATAGAGAACAATTTATTCTCTGGGCCAATTCCTCCAAAATTGTTGTCTATCCCTAATTTCAGTAAAAATGGGAATCCCTTTAATACTACTATCATTCCATCACCTCCTCTTGCAGCCCCTGCACCAGTAGCTATGGTTCCATCCCCCCGAGAATCGCCTTGGACAGTGGCATATGGTCCTTCTGCCCTGACAGCACGAGTGCCTGCAAGTGCTAGGAGGTCTTTTATGGCTAAGAGTATCATCTGGATTGCTGGTGCAGGTCTTTTTGTATTCATTGTTTTGGGAGTTTGTCTTCTAATGTTGTGTTGCATTAAGAGGAGGCCGCAGAAGAAAAATGCTAAGAAACTTGATGATGTGGGCGTGTTTGGGGGACCTTTGAATAAATCTGCATGCAATGATTATGTTTTTGGAGCAACTAATCAAGAGGAGAAGGGTAAATGTGAAGTACCAAATAGGAGCACAAATTCGAGTCCTAAGGTTCAAGAGGAAGGAGACATATATGTGAAAGTAGTATCTGCAACTTCAGAATGCAATAGTGGTCATCAATCAATGAACACTGGAGGGGGTTCCAAACTTTCACCCCTGCAGCCACCACCAAAACACTCTTTCCCAACCATTTCTGGTGAGAAGATCACTATTAATCCGGCTATAACTACCAAAGAAGCTGAAAAACAAGTTATGACAAATTCCATCAAAGTTTATACTGTTGCATTGCTTCAACAATATACAAATAACTTTTCCCAAGAAAACTGCATTGGGGAAGGCACACTAGGGCCTGTTTATCGGGCTGAACTACCTGATGGAAAGCTATTGGCAGTGAGGAAACTGGATGCTACTGCTTCGATGGGGCAGAGTCATGAGCAATTTCTTCAATTGGTATCCAGCATCTCCAATATTCAGCATGCAAATATTGCAAGACTTGTAGGCTACTGTGTTGAACATAGCCAACGACTACTTGTGTACGAGTATTGCAGTAATGGGACCCTACATAATGTATTGCATGGGGATGATAATCAGCGAATCAAACTTCCATGGAATGCACGCATTCGAGTGGCACTCGGAGCTGCCAGAGCTTTAGAGTACCTGCACGAGAACTTTAGGCCACCTATTGTGCATCGAAATTTTAGGTCTAATAATGTTCTTCTGAATGACAATTTGGAAGTGTGCATATCTGATTGTGGATTAGGGCCATTGTTGTCATCTGGCTCTACGGGTCAGTTATCAGGGCGCCTCCTTACTGCTTATGGTTACAGTGCCCCAGAATTTGAGTCTGGAAGTTATACACAGCAAAGTGATGTCTTCAGTTTTGGTGTTGTAATGTTAGAACTCCTTACTGGACGAAAATCTCATGACAACATCACAAATGTTTAG 1950 0.4349 MTSTKLELHVGIFVTCVVILAGTFCVGDTDVVDVGAINSLYVSLGSPPLQGWKSVGGDPCLELWQGVACVFSNITAIHLGSMNLGGQLGSNLNFPSILELDLSNNHIEGPIPFTLPPTLRSLSLSGNRLNGSIPDALSLLTQLSNLDLSNNNLSGQLPSSTGSLSSLTTLHLQNNQLSGTLYVLQDLPLQDLDIENNLFSGPIPPKLLSIPNFSKNGNPFNTTIIPSPPLAAPAPVAMVPSPRESPWTVAYGPSALTARVPASARRSFMAKSIIWIAGAGLFVFIVLGVCLLMLCCIKRRPQKKNAKKLDDVGVFGGPLNKSACNDYVFGATNQEEKGKCEVPNRSTNSSPKVQEEGDIYVKVVSATSECNSGHQSMNTGGGSKLSPLQPPPKHSFPTISGEKITINPAITTKEAEKQVMTNSIKVYTVALLQQYTNNFSQENCIGEGTLGPVYRAELPDGKLLAVRKLDATASMGQSHEQFLQLVSSISNIQHANIARLVGYCVEHSQRLLVYEYCSNGTLHNVLHGDDNQRIKLPWNARIRVALGAARALEYLHENFRPPIVHRNFRSNNVLLNDNLEVCISDCGLGPLLSSGSTGQLSGRLLTAYGYSAPEFESGSYTQQSDVFSFGVVMLELLTGRKSHDNITNV 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02842 649 SUPERFAMILY Protein kinase-like (PK-like) 419 647 IPR011009 -
Viun6g02842 649 Gene3D Phosphorylase Kinase; domain 1 402 516 - -
Viun6g02842 649 ProSiteProfiles Protein kinase domain profile. 439 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02842 649 MobiDBLite consensus disorder prediction 372 400 - -
Viun6g02842 649 Gene3D Ribonuclease Inhibitor 36 228 IPR032675 -
Viun6g02842 649 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 406 516 - -
Viun6g02842 649 SUPERFAMILY L domain-like 64 227 - -
Viun6g02842 649 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 143 231 - -
Viun6g02842 649 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 72 642 - -
Viun6g02842 649 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 142 - -
Viun6g02842 649 Pfam Protein tyrosine and serine/threonine kinase 442 647 IPR001245 GO:0004672|GO:0006468
Viun6g02842 649 Gene3D Transferase(Phosphotransferase) domain 1 517 648 - -
Viun6g02842 649 PRINTS Leucine-rich repeat signature 143 156 - -
Viun6g02842 649 PRINTS Leucine-rich repeat signature 164 177 - -
Viun6g02842 649 ProSiteProfiles Leucine-rich repeat profile. 118 140 IPR001611 GO:0005515
Viun6g02842 649 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 517 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02842 Viun-Chr6 31992561 31998489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02842 23 644 Strubbelig Receptor Gene Family AT4G03390 48.065 3.29e-178 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Viun6g02842 PK_Tyr_Ser-Thr 5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02842 - - gmx:100793423 1026.16