Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02835 ATGGACCATGAAGGTGATGATTTTGACTTCACAGAAAGGACAGGAGTTTCCAATTGTGAGATGCCTGCTTACATATGCACAAGATTTCCTGATGCTGAGGTTAATTCAAGCAATGTAGCTGTATGTGGAGATAGTTTGAAACTGACTATGTGGAAGTGTGAAAATGATAACCAAATCAAGCATGTAGGATATGGTGCAGAATCTGAACCTGCTTCACATGGTTCTATCATTGAGAATATTGATGTAAAATTTGATGATTATGAAACCTATACGAAAGAGATCACTGGACCTTCTGGTAAACAGGAAAATGACTCGTGTACATCGTTTGAAAGATCGTTTGTCGATGCTGATAGATTGTCTTATGTTGCAACTTCAACTGATTCCTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAATGACTATTATCCTTCTTTTAATATTTACCAAGGTATGGATGATAGGCCTGCTATTGCCAACGCTTCTGATTGTTTGTTTAATGGTGCTTATCCTCACGTGTGGGAAAATGAAAAAATGACGAGGAACATGAAGGTCAACAAGATGGAGTTATTTACTGATACAAGTGGTGGCATGCGTTCCATCATCAGTGGGGGGATGTCTTTTCAAGATAATCAATATACGTTCCAAGATAGTAAATATGCATCGTCTTTTCCTGGTAATGTTCTCTTTGAAGACAGTGCATCAGTGCAACAGTCAACTTGTGCTTCATATATTTCAAGTGCAGGTGAATCACTTAATGTCAAAACTGATAGAGATGGACTGATTATGCGTTACCAAAATCCTGCTCACAGTGAGGATGCTGAGTTCAATGTAGGTCAGGAGATGAAACAACTACCTGGTACTTTTCCTGCAGTTGGATCTCAGGGTAATGATTTATTGAGGTGTGAGGATAGTGTTACATTCACAACGACCGAGAAAGCCAAATATTATCAAGACGCTATTGGTGGAGCTGCCAATTACTTTCCAGGAATTATGGGAAACTTAAATTTAAAACCATTTGACAAATCTTTGTATAATCTCCAGACATCAATTGCCAGTGGGAAGCTGTATAATTGTGTTATGAGTGAAGGAGAGGGAAAATCAATTGAGCATAGAAGTATTGATTCCCAGCTTTCAAAAGGAAGTACCGACAAATCCAATATTGAGGATGAATCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTGTGAGTCGATCAGCAGATCTTGGGAATTCCCTCAACACATTACAATCTTCAAGAGGTGTTTATACTCATTCTTCTACGGTGGGAGTTATGAGACCAAAGGCACGTGACGAGCAGTACATATTACGAGTTGCATTGCAGGATCTTTCCCAACCAAAATCAGAGGTTAGTCCACCAGATGGACTGCTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACTTCAAGTTTGTACTGTTGTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACAGTGTCGACCATTGCTTTAATATTAAAGGAAAGACCTCCATTGGTGAATAAATCCAACATTGCAAAGAAAAGTGAATTAGAAACTTTGAACCTGGATGCAGATGATGATCAGCTTCCTGAGAGTGGCGTAGTGAATACTGAATCTAATATTGTTCAAGATTTATCTTGTATAAATACAAACAAGAACATGAATTTGCTAGTGCATGTAAAAGGAAGGCCGTCTGCAGGAACCCTTGTTGTTTGTCCAACTAGTGTCTTGCGGCAATGGGATGAAGAGTTGCACAGTAAGGTAACTGGCAAAGCAAATCTTTCTGTCCTAGTGTACCATGGTAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGCATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGACAAAGACGATGAAGAAAAAGGAGCTTATGATGATCCTGCAGTATCAAGCAAGAAAAGGAAATGCCCTTCTAGTTCTAAAACTAGCAAGAAGGGACTGGACTCTGCGATGCTTGACTCTGTTGCTCGTCCTCTTGCGAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATCAAGAATCACAGAACTCAAGTTGCAAGGGCTTGTTGGGGTCTTAGAGCAAAGCGTAGATGGTGCTTATCAGGGACTCCTATCCAGAATGCAATCGATGATCTCTATAGCTACTTCAGATTTTTAAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCTATCAGCAAAAGTCCATCGAAAGGATATAGAAAGCTACAAGCTGTCTTAAAAACAATCATGTTACGTCGCACAAAAGGCACACTTCTTGATGGGGAGCCTATCATTTCTTTGCCACCTAAATCTGTAGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCTAGACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAATTATGTTAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCATGCGATCATCCCCTGCTTGTCAAGCGTTACAATTCTAACTCCCTCTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTACTCAGGAAAAACGATTATCTCTTTTAAATTGTTTGGAAGCTTGTTTGGCCCTCTGCGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTTTGTAACCAGTGCATTTGCGAACATCTTACTGGTGATGACAATCAGTGCCCTGCTACAAACTGCAAAATTCGATTAAGCATGTCTTCAGTGTTCTCCAAAGTCACATTGAATAGTTCTTTTTCTGATCAGGCTTGTGATAATTTGCCTGCTTACTCTGGTTGTGAAGTGGATGAATCTGAGTTTTATTCTGAGAGTCAGCCATATAATTCTTCAAAAATTAGGGCTGCACTTGAGGTGTTGCAGTCTTTGTCTAAACCACAATGCTGTGCTCCCCAAAGCAATTCTGTGCATAGCACTCTGGGGGAAACTACTGATGGGCTCGGCAGCTCATCTTGTGACCGAATGAAATCCTCAAATGAATGTCCTGAGAACCAAAATGTGTTAGAGAGAGCCTCTAATAATTCAATTGGTGGTGAGAAAGCTATAGTGTTTTCGCAGTGGACTAGGATGCTAGATTTACTTGAAGCATGTCTTAAGAATTCTTCAATCCAGTATAGAAGACTTGACGGAACAATGTCTGTCTCGGCAAGGGATAAAGCTGTTAAAGACTTTAACACTCTCCCTGAGGTTTCAGTTATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCCTGCCATGTTCTTATGCTAGATCTTTGGTGGAATCCGACAACTGAAGATCAAGCTATAGACAGAGCGCATCGTATTGGACAGACCCGTCCTGTCACAGTCTTGCGGTTAACTGTTAGAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAAAAGCAAAAAATGGTTGCGTCTGCCTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACTGTGGATGATCTAAAATACCTGTTCATGATGTGA 3666 0.4062 MDHEGDDFDFTERTGVSNCEMPAYICTRFPDAEVNSSNVAVCGDSLKLTMWKCENDNQIKHVGYGAESEPASHGSIIENIDVKFDDYETYTKEITGPSGKQENDSCTSFERSFVDADRLSYVATSTDSSICQGSNVPNDFNDYYPSFNIYQGMDDRPAIANASDCLFNGAYPHVWENEKMTRNMKVNKMELFTDTSGGMRSIISGGMSFQDNQYTFQDSKYASSFPGNVLFEDSASVQQSTCASYISSAGESLNVKTDRDGLIMRYQNPAHSEDAEFNVGQEMKQLPGTFPAVGSQGNDLLRCEDSVTFTTTEKAKYYQDAIGGAANYFPGIMGNLNLKPFDKSLYNLQTSIASGKLYNCVMSEGEGKSIEHRSIDSQLSKGSTDKSNIEDESDVCIIEDISHPAPVSRSADLGNSLNTLQSSRGVYTHSSTVGVMRPKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCCGGILADDQGLGKTVSTIALILKERPPLVNKSNIAKKSELETLNLDADDDQLPESGVVNTESNIVQDLSCINTNKNMNLLVHVKGRPSAGTLVVCPTSVLRQWDEELHSKVTGKANLSVLVYHGSNRTKDPYELAKHDVVLTTYSIVSMEVPKQPLVDKDDEEKGAYDDPAVSSKKRKCPSSSKTSKKGLDSAMLDSVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISKSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLTQEKRLSLLNCLEACLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPATNCKIRLSMSSVFSKVTLNSSFSDQACDNLPAYSGCEVDESEFYSESQPYNSSKIRAALEVLQSLSKPQCCAPQSNSVHSTLGETTDGLGSSSCDRMKSSNECPENQNVLERASNNSIGGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVSARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKQKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02835 1221 CDD DEXDc_SHPRH-like 472 793 - -
Viun6g02835 1221 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1050 1216 IPR001650 -
Viun6g02835 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 793 IPR027417 -
Viun6g02835 1221 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 564 653 - -
Viun6g02835 1221 Pfam Zinc finger, C3HC4 type (RING finger) 909 945 IPR018957 GO:0046872
Viun6g02835 1221 MobiDBLite consensus disorder prediction 648 668 - -
Viun6g02835 1221 Pfam SNF2-related domain 492 870 IPR000330 GO:0005524|GO:0140658
Viun6g02835 1221 MobiDBLite consensus disorder prediction 648 683 - -
Viun6g02835 1221 SMART ultradead3 468 770 IPR014001 -
Viun6g02835 1221 Gene3D - 441 535 IPR038718 -
Viun6g02835 1221 Gene3D - 808 1220 IPR027417 -
Viun6g02835 1221 ProSitePatterns Zinc finger RING-type signature. 924 933 IPR017907 -
Viun6g02835 1221 Pfam Helicase conserved C-terminal domain 1064 1163 IPR001650 -
Viun6g02835 1221 SMART ring_2 909 947 IPR001841 -
Viun6g02835 1221 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 487 755 IPR014001 -
Viun6g02835 1221 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 285 1220 - -
Viun6g02835 1221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 906 972 IPR013083 -
Viun6g02835 1221 Gene3D - 558 656 IPR038718 -
Viun6g02835 1221 Gene3D - 668 794 IPR038718 -
Viun6g02835 1221 SMART helicmild6 1080 1163 IPR001650 -
Viun6g02835 1221 MobiDBLite consensus disorder prediction 1020 1046 - -
Viun6g02835 1221 SUPERFAMILY RING/U-box 908 955 - -
Viun6g02835 1221 CDD SF2_C_SNF 1065 1173 - -
Viun6g02835 1221 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 674 805 - -
Viun6g02835 1221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 801 1220 IPR027417 -
Viun6g02835 1221 ProSiteProfiles Zinc finger RING-type profile. 909 948 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02835 Viun-Chr6 31950400 31958939 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02835 362 1220 RAD5 or RAD16-like Gene Family AT1G61140 59.841 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun6g02835 SNF2_N 1.4e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02835 - - gmx:100805307 2004.56