Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02833 ATGATGGCGGATGAGGGATTCGGCTACGCGTGCTTCTTGGACGGTGACGGGAACGCCGCCGATGACGACAAGTTTTGCATCGATCTGGAAACTGTTATGAGCGTTCTCGACGAGGATAACAATCCCTCTGAGAGTAGTCCCGAGGATTTTTCATTGAAAAATATTTCACCTGGTGAATCTGGCATCCATGATAATTTTCTACTTCAAAACGCAGGGAATTCTGTGCTTGAATGTGAACATGAAAACCAGGGACCTTCACCACAGACTTTCTCTTCCCCAAATGCTCTTGCTGGTGGTTACATGGACCATGAAGGTGATGATTTTGACTTCACAGAAAGGACAGGAGTTTCCAATTGTGAGATGCCTGCTTACATATGCACAAGATTTCCTGATGCTGAGGTTAATTCAAGCAATGTAGCTGTATGTGGAGATAGTTTGAAACTGACTATGTGGAAGTGTGAAAATGATAACCAAATCAAGCATGTAGGATATGGTGCAGAATCTGAACCTGCTTCACATGGTTCTATCATTGAGAATATTGATGTAAAATTTGATGATTATGAAACCTATACGAAAGAGATCACTGGACCTTCTGGTAAACAGGAAAATGACTCGTGTACATCGTTTGAAAGATCGTTTGTCGATGCTGATAGATTGTCTTATGTTGCAACTTCAACTGATTCCTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAATGACTATTATCCTTCTTTTAATATTTACCAAGGTATGGATGATAGGCCTGCTATTGCCAACGCTTCTGATTGTTTGTTTAATGGTGCTTATCCTCACGTGTGGGAAAATGAAAAAATGACGAGGAACATGAAGGTCAACAAGATGGAGTTATTTACTGATACAAGTGGTGGCATGCGTTCCATCATCAGTGGGGGGATGTCTTTTCAAGATAATCAATATACGTTCCAAGATAGTAAATATGCATCGTCTTTTCCTGGTAATGTTCTCTTTGAAGACAGTGCATCAGTGCAACAGTCAACTTGTGCTTCATATATTTCAAGTGCAGGTCAGGAGATGAAACAACTACCTGGTACTTTTCCTGCAGTTGGATCTCAGGGTAATGATTTATTGAGGTGTGAGGATAGTGTTACATTCACAACGACCGAGAAAGCCAAATATTATCAAGACGCTATTGGTGGAGCTGCCAATTACTTTCCAGGAATTATGGGAAACTTAAATTTAAAACCATTTGACAAATCTTTGTATAATCTCCAGACATCAATTGCCAGTGGGAAGCTGTATAATTGTGTTATGAGTGAAGGAGAGGGAAAATCAATTGAGCATAGAAGTATTGATTCCCAGCTTTCAAAAGGAAGTACCGACAAATCCAATATTGAGGATGAATCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTGTGAGTCGATCAGCAGATCTTGGGAATTCCCTCAACACATTACAATCTTCAAGAGGTGTTTATACTCATTCTTCTACGGTGGGAGTTATGAGACCAAAGGCACGTGACGAGCAGTACATATTACGAGTTGCATTGCAGGATCTTTCCCAACCAAAATCAGAGGTTAGTCCACCAGATGGACTGCTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACTTCAAGTTTGTACTGTTGTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACAGTGTCGACCATTGCTTTAATATTAAAGGAAAGACCTCCATTGGTGAATAAATCCAACATTGCAAAGAAAAGTGAATTAGAAACTTTGAACCTGGATGCAGATGATGATCAGCTTCCTGAGAGTGGCGTAGTGAATACTGAATCTAATATTGTTCAAGATTTATCTTGTATAAATACAAACAAGAACATGAATTTGCTAGTGCATGTAAAAGGAAGGCCGTCTGCAGGAACCCTTGTTGTTTGTCCAACTAGTGTCTTGCGGCAATGGGATGAAGAGTTGCACAGTAAGGTAACTGGCAAAGCAAATCTTTCTGTCCTAGTGTACCATGGTAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGCATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGACAAAGACGATGAAGAAAAAGGAGCTTATGATGATCCTGCAGTATCAAGCAAGAAAAGGAAATGCCCTTCTAGTTCTAAAACTAGCAAGAAGGGACTGGACTCTGCGATGCTTGACTCTGTTGCTCGTCCTCTTGCGAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATCAAGAATCACAGAACTCAAGTTGCAAGGGCTTGTTGGGGTCTTAGAGCAAAGCGTAGATGGTGCTTATCAGGGACTCCTATCCAGAATGCAATCGATGATCTCTATAGCTACTTCAGATTTTTAAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCTATCAGCAAAAGTCCATCGAAAGGATATAGAAAGCTACAAGCTGTCTTAAAAACAATCATGTTACGTCGCACAAAAGGCACACTTCTTGATGGGGAGCCTATCATTTCTTTGCCACCTAAATCTGTAGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCTAGACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAATTATGTTAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCATGCGATCATCCCCTGCTTGTCAAGCGTTACAATTCTAACTCCCTCTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTACTCAGGAAAAACGATTATCTCTTTTAAATTGTTTGGAAGCTTGTTTGGCCCTCTGCGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTTTGTAACCAGTGCATTTGCGAACATCTTACTGGTGATGACAATCAGTGCCCTGCTACAAACTGCAAAATTCGATTAAGCATGTCTTCAGTGTTCTCCAAAGTCACATTGAATAGTTCTTTTTCTGATCAGGCTTGTGATAATTTGCCTGCTTACTCTGGTTGTGAAGTGGATGAATCTGAGTTTTATTCTGAGAGTCAGCCATATAATTCTTCAAAAATTAGGGCTGCACTTGAGGTGTTGCAGTCTTTGTCTAAACCACAATGCTGTGCTCCCCAAAGCAATTCTGTGCATAGCACTCTGGGGGAAACTACTGATGGGCTCGGCAGCTCATCTTGTGACCGAATGAAATCCTCAAATGAATGTCCTGAGAACCAAAATGTGTTAGAGAGAGCCTCTAATAATTCAATTGGTGGTGAGAAAGCTATAGTGTTTTCGCAGTGGACTAGGATGCTAGATTTACTTGAAGCATGTCTTAAGAATTCTTCAATCCAGTATAGAAGACTTGACGGAACAATGTCTGTCTCGGCAAGGGATAAAGCTGTTAAAGACTTTAACACTCTCCCTGAGGTTTCAGTTATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCCTGCCATGTTCTTATGCTAGATCTTTGGTGGAATCCGACAACTGAAGATCAAGCTATAGACAGAGCGCATCGTATTGGACAGACCCGTCCTGTCACAGTCTTGCGGTTAACTGTTAGAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAAAAGCAAAAAATGGTTGCGTCTGCCTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACTGTGGATGATCTAAAATACCTGTTCATGATGTGA 3876 0.4112 MMADEGFGYACFLDGDGNAADDDKFCIDLETVMSVLDEDNNPSESSPEDFSLKNISPGESGIHDNFLLQNAGNSVLECEHENQGPSPQTFSSPNALAGGYMDHEGDDFDFTERTGVSNCEMPAYICTRFPDAEVNSSNVAVCGDSLKLTMWKCENDNQIKHVGYGAESEPASHGSIIENIDVKFDDYETYTKEITGPSGKQENDSCTSFERSFVDADRLSYVATSTDSSICQGSNVPNDFNDYYPSFNIYQGMDDRPAIANASDCLFNGAYPHVWENEKMTRNMKVNKMELFTDTSGGMRSIISGGMSFQDNQYTFQDSKYASSFPGNVLFEDSASVQQSTCASYISSAGQEMKQLPGTFPAVGSQGNDLLRCEDSVTFTTTEKAKYYQDAIGGAANYFPGIMGNLNLKPFDKSLYNLQTSIASGKLYNCVMSEGEGKSIEHRSIDSQLSKGSTDKSNIEDESDVCIIEDISHPAPVSRSADLGNSLNTLQSSRGVYTHSSTVGVMRPKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCCGGILADDQGLGKTVSTIALILKERPPLVNKSNIAKKSELETLNLDADDDQLPESGVVNTESNIVQDLSCINTNKNMNLLVHVKGRPSAGTLVVCPTSVLRQWDEELHSKVTGKANLSVLVYHGSNRTKDPYELAKHDVVLTTYSIVSMEVPKQPLVDKDDEEKGAYDDPAVSSKKRKCPSSSKTSKKGLDSAMLDSVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISKSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLTQEKRLSLLNCLEACLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPATNCKIRLSMSSVFSKVTLNSSFSDQACDNLPAYSGCEVDESEFYSESQPYNSSKIRAALEVLQSLSKPQCCAPQSNSVHSTLGETTDGLGSSSCDRMKSSNECPENQNVLERASNNSIGGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVSARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKQKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02833 1291 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1120 1286 IPR001650 -
Viun6g02833 1291 ProSitePatterns Zinc finger RING-type signature. 994 1003 IPR017907 -
Viun6g02833 1291 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 976 1042 IPR013083 -
Viun6g02833 1291 Gene3D - 738 864 IPR038718 -
Viun6g02833 1291 Gene3D - 628 726 IPR038718 -
Viun6g02833 1291 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 634 723 - -
Viun6g02833 1291 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 744 875 - -
Viun6g02833 1291 CDD SF2_C_SNF 1135 1243 - -
Viun6g02833 1291 SMART helicmild6 1150 1233 IPR001650 -
Viun6g02833 1291 Pfam Zinc finger, C3HC4 type (RING finger) 979 1015 IPR018957 GO:0046872
Viun6g02833 1291 MobiDBLite consensus disorder prediction 718 738 - -
Viun6g02833 1291 MobiDBLite consensus disorder prediction 718 753 - -
Viun6g02833 1291 ProSiteProfiles Zinc finger RING-type profile. 979 1018 IPR001841 -
Viun6g02833 1291 Gene3D - 878 1290 IPR027417 -
Viun6g02833 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 527 863 IPR027417 -
Viun6g02833 1291 SMART ultradead3 538 840 IPR014001 -
Viun6g02833 1291 MobiDBLite consensus disorder prediction 78 95 - -
Viun6g02833 1291 Pfam SNF2-related domain 562 940 IPR000330 GO:0005524|GO:0140658
Viun6g02833 1291 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 366 1290 - -
Viun6g02833 1291 SMART ring_2 979 1017 IPR001841 -
Viun6g02833 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 871 1290 IPR027417 -
Viun6g02833 1291 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 557 825 IPR014001 -
Viun6g02833 1291 CDD DEXDc_SHPRH-like 542 863 - -
Viun6g02833 1291 Gene3D - 511 605 IPR038718 -
Viun6g02833 1291 MobiDBLite consensus disorder prediction 78 98 - -
Viun6g02833 1291 Pfam Helicase conserved C-terminal domain 1134 1233 IPR001650 -
Viun6g02833 1291 MobiDBLite consensus disorder prediction 1090 1116 - -
Viun6g02833 1291 SUPERFAMILY RING/U-box 978 1025 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02833 Viun-Chr6 31950400 31959263 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02833 432 1290 RAD5 or RAD16-like Gene Family AT1G61140 59.841 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun6g02833 SNF2_N 1.6e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02833 - - gmx:100805307 1948.71