Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02831 ATGATGGCGGATGAGGGATTCGGCTACGCGTGCTTCTTGGACGGTGACGGGAACGCCGCCGATGACGACAAGTTTTGCATCGATCTGGAAACTGTTATGAGCGTTCTCGACGAGGATAACAATCCCTCTGAGAGTAGTCCCGAGGATTTTTCATTGAAAAATATTTCACCTGGTGAATCTGGCATCCATGATAATTTTCTACTTCAAAACGCAGGGAATTCTGTGCTTGAATGTGAACATGAAAACCAGGGACCTTCACCACAGACTTTCTCTTCCCCAAATGCTCTTGCTGGTGGTTACATGGACCATGAAGGTGATGATTTTGACTTCACAGAAAGGACAGGAGTTTCCAATTGTGAGATGCCTGCTTACATATGCACAAGATTTCCTGATGCTGAGGTTAATTCAAGCAATGTAGCTGTATGTGGAGATAGTTTGAAACTGACTATGTGGAAGTGTGAAAATGATAACCAAATCAAGCATGTAGGATATGGTGCAGAATCTGAACCTGCTTCACATGGTTCTATCATTGAGAATATTGATGTAAAATTTGATGATTATGAAACCTATACGAAAGAGATCACTGGACCTTCTGGTAAACAGGAAAATGACTCGTGTACATCGTTTGAAAGATCGTTTGTCGATGCTGATAGATTGTCTTATGTTGCAACTTCAACTGATTCCTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAATGACTATTATCCTTCTTTTAATATTTACCAAGGTATGGATGATAGGCCTGCTATTGCCAACGCTTCTGATTGTTTGTTTAATGGTGCTTATCCTCACGTGTGGGAAAATGAAAAAATGACGAGGAACATGAAGGTCAACAAGATGGAGTTATTTACTGATACAAGTGGTGGCATGCGTTCCATCATCAGTGGGGGGATGTCTTTTCAAGATAATCAATATACGTTCCAAGATAGTAAATATGCATCGTCTTTTCCTGGTAATGTTCTCTTTGAAGACAGTGCATCAGTGCAACAGTCAACTTGTGCTTCATATATTTCAAGTGCAGGTGAATCACTTAATGTCAAAACTGATAGAGATGGACTGATTATGCGTTACCAAAATCCTGCTCACAGTGAGGATGCTGAGTTCAATGTAGGTCAGGAGATGAAACAACTACCTGGTACTTTTCCTGCAGTTGGATCTCAGGGTAATGATTTATTGAGGTGTGAGGATAGTGTTACATTCACAACGACCGAGAAAGCCAAATATTATCAAGACGCTATTGGTGGAGCTGCCAATTACTTTCCAGGAATTATGGGAAACTTAAATTTAAAACCATTTGACAAATCTTTGTATAATCTCCAGACATCAATTGCCAGTGGGAAGCTGTATAATTGTGTTATGAGTGAAGGAGAGGGAAAATCAATTGAGCATAGAAGTATTGATTCCCAGCTTTCAAAAGGAAGTACCGACAAATCCAATATTGAGGATGAATCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTGTGAGTCGATCAGCAGATCTTGGGAATTCCCTCAACACATTACAATCTTCAAGAGGTGTTTATACTCATTCTTCTACGGTGGGAGTTATGAGACCAAAGGCACGTGACGAGCAGTACATATTACGAGTTGCATTGCAGGATCTTTCCCAACCAAAATCAGAGGTTAGTCCACCAGATGGACTGCTGGCAGTTCCTCTTTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACTTCAAGTTTGTACTGTTGTGGAGGAATTCTTGCAGATGATCAGGGTCTTGGAAAAACAGTGTCGACCATTGCTTTAATATTAAAGGAAAGACCTCCATTGGTGAATAAATCCAACATTGCAAAGAAAAGTGAATTAGAAACTTTGAACCTGGATGCAGATGATGATCAGCTTCCTGAGAGTGGCGTAGTGAATACTGAATCTAATATTGTTCAAGATTTATCTTGTATAAATACAAACAAGAACATGAATTTGCTAGTGCATGTAAAAGGAAGGCCGTCTGCAGGAACCCTTGTTGTTTGTCCAACTAGTGTCTTGCGGCAATGGGATGAAGAGTTGCACAGTAAGGTAACTGGCAAAGCAAATCTTTCTGTCCTAGTGTACCATGGTAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGCATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTCCCTAAGCAGCCTCTAGTTGACAAAGACGATGAAGAAAAAGGAGCTTATGATGATCCTGCAGTATCAAGCAAGAAAAGGAAATGCCCTTCTAGTTCTAAAACTAGCAAGAAGGGACTGGACTCTGCGATGCTTGACTCTGTTGCTCGTCCTCTTGCGAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATCAAGAATCACAGAACTCAAGTTGCAAGGGCTTGTTGGGGTCTTAGAGCAAAGCGTAGATGGTGCTTATCAGGGACTCCTATCCAGAATGCAATCGATGATCTCTATAGCTACTTCAGATTTTTAAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCTATCAGCAAAAGTCCATCGAAAGGATATAGAAAGCTACAAGCTGTCTTAAAAACAATCATGTTACGTCGCACAAAAGGCACACTTCTTGATGGGGAGCCTATCATTTCTTTGCCACCTAAATCTGTAGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCTAGACTAGAGGCTGATTCCCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAATTATGTTAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCATGCGATCATCCCCTGCTTGTCAAGCGTTACAATTCTAACTCCCTCTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTACTCAGGAAAAACGATTATCTCTTTTAAATTGTTTGGAAGCTTGTTTGGCCCTCTGCGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTTTGTAACCAGTGCATTTGCGAACATCTTACTGGTGATGACAATCAGTGCCCTGCTACAAACTGCAAAATTCGATTAAGCATGTCTTCAGTGTTCTCCAAAGTCACATTGAATAGTTCTTTTTCTGATCAGGCTTGTGATAATTTGCCTGCTTACTCTGGTTGTGAAGTGGATGAATCTGAGTTTTATTCTGAGAGTCAGCCATATAATTCTTCAAAAATTAGGGCTGCACTTGAGGTGTTGCAGTCTTTGTCTAAACCACAATGCTGTGCTCCCCAAAGCAATTCTGTGCATAGCACTCTGGGGGAAACTACTGATGGGCTCGGCAGCTCATCTTGTGACCGAATGAAATCCTCAAATGAATGTCCTGAGAACCAAAATGTGTTAGAGAGAGCCTCTAATAATTCAATTGGTGGTGAGAAAGCTATAGTGTTTTCGCAGTGGACTAGGATGCTAGATTTACTTGAAGCATGTCTTAAGAATTCTTCAATCCAGTATAGAAGACTTGACGGAACAATGTCTGTCTCGGCAAGGGATAAAGCTGTTAAAGACTTTAACACTCTCCCTGAGGTTTCAGTTATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCCTGCCATGTTCTTATGCTAGATCTTTGGTGGAATCCGACAACTGAAGATCAAGCTATAGACAGAGCGCATCGTATTGGACAGACCCGTCCTGTCACAGTCTTGCGGTTAACTGTTAGAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAAAAGCAAAAAATGGTTGCGTCTGCCTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGTCGCCTTACTGTGGATGATCTAAAATACCTGTTCATGATGTGA 3966 0.411 MMADEGFGYACFLDGDGNAADDDKFCIDLETVMSVLDEDNNPSESSPEDFSLKNISPGESGIHDNFLLQNAGNSVLECEHENQGPSPQTFSSPNALAGGYMDHEGDDFDFTERTGVSNCEMPAYICTRFPDAEVNSSNVAVCGDSLKLTMWKCENDNQIKHVGYGAESEPASHGSIIENIDVKFDDYETYTKEITGPSGKQENDSCTSFERSFVDADRLSYVATSTDSSICQGSNVPNDFNDYYPSFNIYQGMDDRPAIANASDCLFNGAYPHVWENEKMTRNMKVNKMELFTDTSGGMRSIISGGMSFQDNQYTFQDSKYASSFPGNVLFEDSASVQQSTCASYISSAGESLNVKTDRDGLIMRYQNPAHSEDAEFNVGQEMKQLPGTFPAVGSQGNDLLRCEDSVTFTTTEKAKYYQDAIGGAANYFPGIMGNLNLKPFDKSLYNLQTSIASGKLYNCVMSEGEGKSIEHRSIDSQLSKGSTDKSNIEDESDVCIIEDISHPAPVSRSADLGNSLNTLQSSRGVYTHSSTVGVMRPKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQRIALSWMVQKETSSLYCCGGILADDQGLGKTVSTIALILKERPPLVNKSNIAKKSELETLNLDADDDQLPESGVVNTESNIVQDLSCINTNKNMNLLVHVKGRPSAGTLVVCPTSVLRQWDEELHSKVTGKANLSVLVYHGSNRTKDPYELAKHDVVLTTYSIVSMEVPKQPLVDKDDEEKGAYDDPAVSSKKRKCPSSSKTSKKGLDSAMLDSVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISKSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLTQEKRLSLLNCLEACLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPATNCKIRLSMSSVFSKVTLNSSFSDQACDNLPAYSGCEVDESEFYSESQPYNSSKIRAALEVLQSLSKPQCCAPQSNSVHSTLGETTDGLGSSSCDRMKSSNECPENQNVLERASNNSIGGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVSARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKQKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02831 1321 MobiDBLite consensus disorder prediction 748 768 - -
Viun6g02831 1321 SUPERFAMILY RING/U-box 1008 1055 - -
Viun6g02831 1321 MobiDBLite consensus disorder prediction 748 783 - -
Viun6g02831 1321 MobiDBLite consensus disorder prediction 1120 1146 - -
Viun6g02831 1321 ProSiteProfiles Zinc finger RING-type profile. 1009 1048 IPR001841 -
Viun6g02831 1321 Gene3D - 658 756 IPR038718 -
Viun6g02831 1321 Gene3D - 768 894 IPR038718 -
Viun6g02831 1321 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 664 753 - -
Viun6g02831 1321 Pfam Zinc finger, C3HC4 type (RING finger) 1009 1045 IPR018957 GO:0046872
Viun6g02831 1321 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1150 1316 IPR001650 -
Viun6g02831 1321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 893 IPR027417 -
Viun6g02831 1321 SMART ultradead3 568 870 IPR014001 -
Viun6g02831 1321 Pfam SNF2-related domain 592 970 IPR000330 GO:0005524|GO:0140658
Viun6g02831 1321 CDD SF2_C_SNF 1165 1273 - -
Viun6g02831 1321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1006 1072 IPR013083 -
Viun6g02831 1321 Gene3D - 541 635 IPR038718 -
Viun6g02831 1321 Gene3D - 908 1320 IPR027417 -
Viun6g02831 1321 SMART helicmild6 1180 1263 IPR001650 -
Viun6g02831 1321 Pfam Helicase conserved C-terminal domain 1164 1263 IPR001650 -
Viun6g02831 1321 MobiDBLite consensus disorder prediction 78 95 - -
Viun6g02831 1321 CDD DEXDc_SHPRH-like 572 893 - -
Viun6g02831 1321 SMART ring_2 1009 1047 IPR001841 -
Viun6g02831 1321 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 382 1320 - -
Viun6g02831 1321 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 587 855 IPR014001 -
Viun6g02831 1321 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 774 905 - -
Viun6g02831 1321 ProSitePatterns Zinc finger RING-type signature. 1024 1033 IPR017907 -
Viun6g02831 1321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 901 1320 IPR027417 -
Viun6g02831 1321 MobiDBLite consensus disorder prediction 78 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02831 Viun-Chr6 31950151 31959263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02831 462 1320 RAD5 or RAD16-like Gene Family AT1G61140 59.841 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun6g02831 SNF2_N 1.6e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02831 - - gmx:100805307 2004.56