Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02827 ATGAATAGCATGGGTTCATCTTCAGAATATCACACTCATCAGCACCCTCATCTTCCTCCTGGGTTTCGGTTCCACCCCACAGACGAGGAACTAGTGGTTCACTACCTCAAGAGAAAAGCAGACTCTGTTCCTCTTCCTGTCGCCATCATCGCCGAGGTTGATCTCTACAAGTTCGATCCGTGGGAGCTCCCAAGTAAAGCAACGTTTGGCGAGCAAGAATGGTACTTTTTCAGTCCAAGGGATAGGAAATACCCAAATGGGGCGAGGCCTAACAGGGCTGCATCTTCTGGGTATTGGAAAGCTACCGGAACTGACAGGCCCATTCTTGCATCTCATGGCCACCACAAAGTTGGAGTCAAGAAAGCACTTGTTTTCTATGGTGGCAAACCCCCAAAAGGGGTTAAAACCAATTGGATCATGCACGAGTACAGGCTTGTTGGAAGTTCCTCAAATTCTTCCTCAAACCCACCTTCTCTGCCTGCACGTAGTACCAAGAAAAACTCATTGAGGCTTGACGACTGGGTTTTGTGCCGAATATACAAGAAAAACAACAGTACCATGATGCCGAGGTTTCCCTTGATGGATCAGAATAAGGAGGTTTCTACGGAGAGCACTATGCTACCAATGATGTCAATTTTGTCAATGGCCAACAATAACAGCACTCAGAATTCCAAAGCCGGGACTTCGAGAAGCGCAAGTTATGGAGCCATGGGACTAGAAAATGATGACAGCTTCTTTGATGGAATCTTAGGAGTTGACCATAGCATGCAGCAAGATGTTTCTGATTCCCACCAAGTCTCTTCAAAGGGAATCTACCCTGTGAAACGAACACTCTCGTCACAGTTGTGGAATGACACAGGATCATCTTCTTCTGGCAGGAGATTCCATTGTGATCTCAATGCAGGAAGCAACACTGTAGAGGAAGATAATTCCTTCGTTTCACTGCTCAGCCAGCTTCCACAGAACACAGCGTTTCACCCAAATGCACTTCTTGGCCCAGTTACTAATGATGTATTGAGGCAACAGTTTCACCTTTCAAACATGAACTGGAATGTTTAG 1059 0.4618 MNSMGSSSEYHTHQHPHLPPGFRFHPTDEELVVHYLKRKADSVPLPVAIIAEVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAASSGYWKATGTDRPILASHGHHKVGVKKALVFYGGKPPKGVKTNWIMHEYRLVGSSSNSSSNPPSLPARSTKKNSLRLDDWVLCRIYKKNNSTMMPRFPLMDQNKEVSTESTMLPMMSILSMANNNSTQNSKAGTSRSASYGAMGLENDDSFFDGILGVDHSMQQDVSDSHQVSSKGIYPVKRTLSSQLWNDTGSSSSGRRFHCDLNAGSNTVEEDNSFVSLLSQLPQNTAFHPNALLGPVTNDVLRQQFHLSNMNWNV 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02827 352 MobiDBLite consensus disorder prediction 1 21 - -
Viun6g02827 352 PANTHER NAC TRANSCRIPTION FACTOR 56 18 223 - -
Viun6g02827 352 SUPERFAMILY NAC domain 11 182 IPR036093 GO:0003677|GO:0006355
Viun6g02827 352 ProSiteProfiles NAC domain profile. 18 182 IPR003441 GO:0003677|GO:0006355
Viun6g02827 352 FunFam NAC transcription factor 56 27 187 - -
Viun6g02827 352 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
Viun6g02827 352 Gene3D NAC domain 27 187 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02827 Viun-Chr6 31924177 31926042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02827 1 351 NAC Transcription Factor Family AT1G61110 53.221 3.66e-112 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun6g02827 NAM 2.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02827 - - gmx:100806369 547.354