Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02818 ATGGGGTTGAGTTCTAAGCAGGTTTCTAATAGAGGGCTTGATTGGGACCAGACTTTGTTGCAGGCTCAAAACTTGGAGCTCCCAAAGCCTACTCCTATGAGGAAACAACAGCAACAAACTCAGCCATCAGAGCCTTTGAAGTGTCCGAGATGTGACTCCATTAACACCAAATTCTGTTACTACAACAACTACAACAAGTCTCAACCCCGCCATTTCTGCAGAGCCTGCAAGAGGCACTGGACTAAAGGTGGAACTCTGCGCAACGTTCCTGTTGGCGGTGGTAGAAAGAATAAGCGAGCCAAGAAATCAACCACCACCACCACCACCACCTCAAATGGCAGCATGGATGGTGAGTTGAGAACCCGCGTCACAGTTCCTCCTCTTGCAGTGGATGATCACAAACCCACACCTTCCTCTCTCTACCAATCTCTGTGCCTGCCGCAACAGAATCCGACGAGTACCAAAGTTTCAGAAGGCAAAGACTTTGGTATTGGCAATGGAATCTTTCTGAGTTCAACTGTGCCTTTTCCTCAAAACCAAAGCCTTCTCTTCCCTTTCACAACCTCGAACTCCTTTGACACATGTGCAGTGTCCAACTCTTTGCAATCCTCCGGTGTGTATAACTACGGTGAAGAGTTTAAAATACTGGAGGAGCCAACCGTGAACAGTACAATGGCCTGCACCAGTGGTGGAACCAGGACACAACCATGGGAGATCGCAGGAACAAGTTCCGGTTTGGAAATGTCAAACTATTGGAGTTGGGAGGACATCGATTCGTTGGTCTCAACTGATCCCAATAATCCTTGGGATGATTCCGACATCAAACCCTGA 831 0.4801 MGLSSKQVSNRGLDWDQTLLQAQNLELPKPTPMRKQQQQTQPSEPLKCPRCDSINTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRAKKSTTTTTTTSNGSMDGELRTRVTVPPLAVDDHKPTPSSLYQSLCLPQQNPTSTKVSEGKDFGIGNGIFLSSTVPFPQNQSLLFPFTTSNSFDTCAVSNSLQSSGVYNYGEEFKILEEPTVNSTMACTSGGTRTQPWEIAGTSSGLEMSNYWSWEDIDSLVSTDPNNPWDDSDIKP 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02818 276 MobiDBLite consensus disorder prediction 103 118 - -
Viun6g02818 276 MobiDBLite consensus disorder prediction 84 118 - -
Viun6g02818 276 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Viun6g02818 276 MobiDBLite consensus disorder prediction 23 46 - -
Viun6g02818 276 Pfam Dof domain, zinc finger 45 99 IPR003851 GO:0003677|GO:0006355
Viun6g02818 276 MobiDBLite consensus disorder prediction 23 47 - -
Viun6g02818 276 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Viun6g02818 276 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 189 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02818 Viun-Chr6 31850155 31852117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02818 29 133 C2C2-Dof Transcription Factor Family AT5G60200 50.000 1.70e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun6g02818 zf-Dof 9.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02818 - - vra:106774613 524.242