Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02812 ATGACTTGTGGCTGCTTTGGAGCCAAATCTACTAAGAAAAGACGTTCTTCTAACGTTGCTGGCGAAATTGATGGTTACCCCCTTGATAATGTTAAGCAATTTTCAGACACAGAACTGAGATTGGCAACTGATAATTACCACTCAAACAATAAGATAGGACGAGGAGGTTTTGGAACAGTTTACCTGGGAACCTTAAGAGATGGAAGACGTGTAGCAGTGAAGACTCTCTCATTTTGGTCAAAGCAGGGAGTTCGTGAATTTTTGACTGAAATAAAAACTTTGTCAAATGTTAAACATCCAAATCTTGTTGAATTGATTGGATTCTGCATCCAAGGACCTAGTCGTACATTAGTCTACGAGTATGTGGAAAATGGGAGCCTTAACAGTGCACTACTTGGAACAAGGAATGAAAACATTAAACTAGACTGGAGAAAAAGATCTGCTATCTGTGTAGGTACTGCTAAGGGTCTTGCTTTTCTTCACGAAGAACTTTCACCACCAATTGTGCACAGAGACATCAAAGCTAGTAATGTACTACTTGACAAAAATTTCAATCCCAAAATAGGTGATTTTGGGTTGGCTAAATTATTCCCAGATGGTATCACTCACGTTAGCACAAGAATTGCTGGAACAACTGGTTACTTAGCACCAGAATATGCAATAGGTGGCCAGTTAACCAAGAAGGCTGATATATACAGTTTTGGGGTTCTTATACTTGAAATAGTTAGTGGCAGAAGCAGTGCCAGGAGGACAAACGGAGAAGGATCACCCAGATTCCTCTTGGAATGGGCCTGGCAACTTTATGAGGAGGGGAGATTGTTGGAATTTGTAGATCCAGAAATGGAAGAGTTTCCTGAGGAAGAGGTACTGAGATACATGAAGGTAGCACTTTTCTGCACCCAGTCAGCAGCAGGTAGAAGACCATTGATGATCCAAGTTGTTAATATGCTATCCAAGGCAATCCAACTCAATGAGAAAGAACTTACAGCACCAGGATTATTCACAGATGAAAGAGACTCTTCTAGTAGGAACTCACAACCTGTCCCTTTTATTACCTCTACACATGGTGCTATTACTCAGGTCACCCCACGGTGA 1095 0.4119 MTCGCFGAKSTKKRRSSNVAGEIDGYPLDNVKQFSDTELRLATDNYHSNNKIGRGGFGTVYLGTLRDGRRVAVKTLSFWSKQGVREFLTEIKTLSNVKHPNLVELIGFCIQGPSRTLVYEYVENGSLNSALLGTRNENIKLDWRKRSAICVGTAKGLAFLHEELSPPIVHRDIKASNVLLDKNFNPKIGDFGLAKLFPDGITHVSTRIAGTTGYLAPEYAIGGQLTKKADIYSFGVLILEIVSGRSSARRTNGEGSPRFLLEWAWQLYEEGRLLEFVDPEMEEFPEEEVLRYMKVALFCTQSAAGRRPLMIQVVNMLSKAIQLNEKELTAPGLFTDERDSSSRNSQPVPFITSTHGAITQVTPR 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02812 364 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 345 - -
Viun6g02812 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Viun6g02812 364 FunFam cold-responsive protein kinase 1 17 121 - -
Viun6g02812 364 CDD STKc_IRAK 52 319 - -
Viun6g02812 364 SUPERFAMILY Protein kinase-like (PK-like) 26 317 IPR011009 -
Viun6g02812 364 MobiDBLite consensus disorder prediction 334 364 - -
Viun6g02812 364 SMART serkin_6 46 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02812 364 MobiDBLite consensus disorder prediction 335 364 - -
Viun6g02812 364 ProSiteProfiles Protein kinase domain profile. 46 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02812 364 Pfam Protein kinase domain 46 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02812 364 FunFam Putative LRR receptor-like serine/threonine-protein kinase 122 329 - -
Viun6g02812 364 Gene3D Transferase(Phosphotransferase) domain 1 122 335 - -
Viun6g02812 364 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Viun6g02812 364 Gene3D Phosphorylase Kinase; domain 1 19 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02812 Viun-Chr6 31799579 31802850 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02812 34 336 Receptor kinase-like Gene Family AT1G56120 52.475 1.69e-102 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun6g02812 Pkinase 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02812 - - gmx:100809588 622.083