Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02810 ATGCAGATTGCAGAGTATACGAGGATCATTATGACTTGTGGCTGCTTTGGAGCCAAATCTACTAAGAAAAGACGTTCTTCTAACGTTGCTGGCGAAATTGATGGTTACCCCCTTGATAATGTTAAGCAATTTTCAGACACAGAACTGAGATTGGCAACTGATAATTACCACTCAAACAATAAGATAGGACGAGGAGGTTTTGGAACAGTTTACCTGGGAACCTTAAGAGATGGAAGACGTGTAGCAGTGAAGACTCTCTCATTTTGGTCAAAGCAGGGAGTTCGTGAATTTTTGACTGAAATAAAAACTTTGTCAAATGTTAAACATCCAAATCTTGTTGAATTGATTGGATTCTGCATCCAAGGACCTAGTCGTACATTAGTCTACGAGTATGTGGAAAATGGGAGCCTTAACAGTGCACTACTTGGAACAAGGAATGAAAACATTAAACTAGACTGGAGAAAAAGATCTGCTATCTGTGTAGGTACTGCTAAGGGTCTTGCTTTTCTTCACGAAGAACTTTCACCACCAATTGTGCACAGAGACATCAAAGCTAGTAATGTACTACTTGACAAAAATTTCAATCCCAAAATAGGTGATTTTGGGTTGGCTAAATTATTCCCAGATGGTATCACTCACGTTAGCACAAGAATTGCTGGAACAACTGGTTACTTAGCACCAGAATATGCAATAGGTGGCCAGTTAACCAAGAAGGCTGATATATACAGTTTTGGGGTTCTTATACTTGAAATAGTTAGTGGCAGAAGCAGTGCCAGGAGGACAAACGGAGAAGGATCACCCAGATTCCTCTTGGAATGGGCCTGGCAACTTTATGAGGAGGGGAGATTGTTGGAATTTGTAGATCCAGAAATGGAAGAGTTTCCTGAGGAAGAGGTACTGAGATACATGAAGGTAGCACTTTTCTGCACCCAGTCAGCAGCAGGTAGAAGACCATTGATGATCCAAGTTGTTAATATGCTATCCAAGGCAATCCAACTCAATGAGAAAGAACTTACAGCACCAGGATTATTCACAGATGAAAGAGACTCTTCTAGTAGGAACTCACAACCTGTCCCTTTTATTACCTCTACACATGGTGCTATTACTCAGGTCACCCCACGGTGA 1125 0.4116 MQIAEYTRIIMTCGCFGAKSTKKRRSSNVAGEIDGYPLDNVKQFSDTELRLATDNYHSNNKIGRGGFGTVYLGTLRDGRRVAVKTLSFWSKQGVREFLTEIKTLSNVKHPNLVELIGFCIQGPSRTLVYEYVENGSLNSALLGTRNENIKLDWRKRSAICVGTAKGLAFLHEELSPPIVHRDIKASNVLLDKNFNPKIGDFGLAKLFPDGITHVSTRIAGTTGYLAPEYAIGGQLTKKADIYSFGVLILEIVSGRSSARRTNGEGSPRFLLEWAWQLYEEGRLLEFVDPEMEEFPEEEVLRYMKVALFCTQSAAGRRPLMIQVVNMLSKAIQLNEKELTAPGLFTDERDSSSRNSQPVPFITSTHGAITQVTPR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02810 374 SUPERFAMILY Protein kinase-like (PK-like) 36 327 IPR011009 -
Viun6g02810 374 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 355 - -
Viun6g02810 374 ProSiteProfiles Protein kinase domain profile. 56 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02810 374 MobiDBLite consensus disorder prediction 345 374 - -
Viun6g02810 374 Gene3D Transferase(Phosphotransferase) domain 1 132 345 - -
Viun6g02810 374 FunFam cold-responsive protein kinase 1 27 131 - -
Viun6g02810 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Viun6g02810 374 ProSitePatterns Protein kinases ATP-binding region signature. 62 84 IPR017441 GO:0005524
Viun6g02810 374 Gene3D Phosphorylase Kinase; domain 1 29 131 - -
Viun6g02810 374 Pfam Protein kinase domain 56 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02810 374 MobiDBLite consensus disorder prediction 344 374 - -
Viun6g02810 374 CDD STKc_IRAK 62 329 - -
Viun6g02810 374 FunFam Putative LRR receptor-like serine/threonine-protein kinase 132 339 - -
Viun6g02810 374 SMART serkin_6 56 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02810 Viun-Chr6 31799562 31802850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02810 44 346 Receptor kinase-like Gene Family AT1G56120 52.475 2.47e-102 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun6g02810 Pkinase 4.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02810 - - gmx:100809588 622.083