Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02804 ATGGTGTCCAATGGAAGCGCATCAGATTTTCCAAGGGAATATGACGGTGCATGCCTTCAGATGAGAATGTCATACAGTATGGCAGCACACCTATTTCTCTTTTTGGTACAATGGACAGATTGCAATCTTGCAGGGGCCCTAGGATTGTTAAGAATCCTAATATACAAGGTTTATGTAGATGGGACAACTACCATGTCTACCCATGAAAGGAAAGCAAGTATTAGAGAATTCTATGCGGTCATATATCCCTCATTGTTGCAACTCCAAAAAGGTGTAACTGATACAGAGGATAAAAAACAGAAGGCTGTATGCTTGGAGAGGTATCGGAAAAGAGACGAAGAGGAGCACAGACAGCCTTCGGATATAGACATTGAAAGGGAAGAAGAATGTGGAATATGCATGGAGATGAACAGTAAGATTGTGTTACCCGACTGCAACCATGTCATGTGCCTGAAATGTTACCACGAATGGAGAACAAGATCACAGTCATGCCCCTTTTGCCGCGACAGTCTGAAGAGAGTAAACTCAGGCGATCTCTGGGTGTTCACTGATGGTAGGGATGTTGTAGACATGGCAACAGTGACAAGAGAGAATCTGAGAAGGCTTTTCATGTACATAGATAAGTTGCCTTTGATCATTCCAGACTCTCTTTTTGACACTTATGACTCTCATCTAAGATGA 681 0.4258 MVSNGSASDFPREYDGACLQMRMSYSMAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAVCLERYRKRDEEEHRQPSDIDIEREEECGICMEMNSKIVLPDCNHVMCLKCYHEWRTRSQSCPFCRDSLKRVNSGDLWVFTDGRDVVDMATVTRENLRRLFMYIDKLPLIIPDSLFDTYDSHLR 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02804 226 ProSiteProfiles Zinc finger RING-type profile. 130 168 IPR001841 -
Viun6g02804 226 Pfam Zinc finger, C3HC4 type (RING finger) 127 173 - -
Viun6g02804 226 PANTHER RING FINGER PROTEIN 41, 151 6 223 - -
Viun6g02804 226 ProSitePatterns Zinc finger RING-type signature. 145 154 IPR017907 -
Viun6g02804 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 189 IPR013083 -
Viun6g02804 226 SUPERFAMILY RING/U-box 124 175 - -
Viun6g02804 226 SMART ring_2 130 167 IPR001841 -
Viun6g02804 226 FunFam RING/U-box superfamily protein 97 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02804 Viun-Chr6 31751285 31755639 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02804 130 185 C3H Transcription Factor Family AT5G01960 39.286 1.70e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02804 K25840 - gmx:100789769 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g01498 3 9838764 9842287 Viun6g02804 6 31751285 31755639 PCT