Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02803 ATGTACATAGCTTCCATGGGAAGGTCTTTCAAGGACTCTTTGAAACTGCTTGAAGCTGATATTCACCATGCCAATACCCTCGCATCAGATTTTCCAAGGGAATATGACGGTGCATGCCTTCAGATGAGAATGTCATACAGTATGGCAGCACACCTATTTCTCTTTTTGGTACAATGGACAGATTGCAATCTTGCAGGGGCCCTAGGATTGTTAAGAATCCTAATATACAAGGTTTATGTAGATGGGACAACTACCATGTCTACCCATGAAAGGAAAGCAAGTATTAGAGAATTCTATGCGGTCATATATCCCTCATTGTTGCAACTCCAAAAAGGTGTAACTGATACAGAGGATAAAAAACAGAAGGCTGTATGCTTGGAGAGGTATCGGAAAAGAGACGAAGAGGAGCACAGACAGCCTTCGGATATAGACATTGAAAGGGAAGAAGAATGTGGAATATGCATGGAGATGAACAGTAAGATTGTGTTACCCGACTGCAACCATGTCATGTGCCTGAAATGTTACCACGAATGGAGAACAAGATCACAGTCATGCCCCTTTTGCCGCGACAGTCTGAAGAGAGTAAACTCAGGCGATCTCTGGGTGTTCACTGATGGTAGGGATGTTGTAGACATGGCAACAGTGACAAGAGAGAATCTGAGAAGGCTTTTCATGTACATAGATAAGTTGCCTTTGATCATTCCAGACTCTCTTTTTGACACTTATGACTCTCATCTAAGATGA 744 0.4247 MYIASMGRSFKDSLKLLEADIHHANTLASDFPREYDGACLQMRMSYSMAAHLFLFLVQWTDCNLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPSLLQLQKGVTDTEDKKQKAVCLERYRKRDEEEHRQPSDIDIEREEECGICMEMNSKIVLPDCNHVMCLKCYHEWRTRSQSCPFCRDSLKRVNSGDLWVFTDGRDVVDMATVTRENLRRLFMYIDKLPLIIPDSLFDTYDSHLR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02803 247 FunFam RING/U-box superfamily protein 118 198 - -
Viun6g02803 247 PANTHER RING FINGER PROTEIN 41, 151 8 244 - -
Viun6g02803 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Viun6g02803 247 SUPERFAMILY RING/U-box 145 196 - -
Viun6g02803 247 SMART ring_2 151 188 IPR001841 -
Viun6g02803 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Viun6g02803 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 210 IPR013083 -
Viun6g02803 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02803 Viun-Chr6 31751285 31755688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02803 151 206 C3H Transcription Factor Family AT5G01960 39.286 1.85e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02803 K25840 - gmx:100789769 490.345