Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02789 ATGGCACTTCACGAATACATTGCCGGGGATTTGAAAAGCATCGAAGATGCTGTGACCGAGACAGAAAACTGCAATGGTTGTTTTGACTGTAACATCTGCTTAGACTTTGCACATGAACCAGTGGTGACCCTGTGTGGCCACCTCTACTGCTGGCCGTGTATCTACAAGTGGCTTCTCGTCCAACATGATTCTCTTACAACCGCTGAGCGGCCTCAGTGCCCCGTTTGCAAGGCTGTTATATCCAATAGCACAATGGTTCCACTCTATGGGCGTGGCAATGCCACAGCCGAAGAGAAAACATCATGTGATGTTTTGATACCTCCAAGACCACCTGCTTCATGTGCTCAAGTTCTTGTGGCAGCACCATCTGGAAGGGGTCAGCGTCTTCCATATCGTAATCCTTACCAGGGTCACTATTTCAGCTCTCGTTCATACCAACAAGAGGACGCCACTTCTCAAACGCTCAATCTTGGATCGCACCACCACCACCCTGTGACTGGTATGTTTGGGGAGATGGTTTATTCCAGAGTGTTTGGCAACCCAGAAAACTTGTATGCATACCCCAATTCTTATCAGCTCATGGGAAGTTCTACTCCTAGATTGAGAAGGCAAGAGATGCAGGCACACAAATCTTTGAACAGAATCTCTATTTTTCTCTTTTGCTGCTTCCTTATCTGTCTTCTTGTCTTCTAA 693 0.469 MALHEYIAGDLKSIEDAVTETENCNGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLLVQHDSLTTAERPQCPVCKAVISNSTMVPLYGRGNATAEEKTSCDVLIPPRPPASCAQVLVAAPSGRGQRLPYRNPYQGHYFSSRSYQQEDATSQTLNLGSHHHHPVTGMFGEMVYSRVFGNPENLYAYPNSYQLMGSSTPRLRRQEMQAHKSLNRISIFLFCCFLICLLVF 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02789 230 ProSiteProfiles Zinc finger RING-type profile. 30 77 IPR001841 -
Viun6g02789 230 SUPERFAMILY RING/U-box 26 95 - -
Viun6g02789 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Viun6g02789 230 SMART ring_2 30 76 IPR001841 -
Viun6g02789 230 Pfam Zinc finger, C3HC4 type (RING finger) 30 76 IPR018957 GO:0046872
Viun6g02789 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 98 IPR013083 -
Viun6g02789 230 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 6 126 - -
Viun6g02789 230 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02789 Viun-Chr6 31683218 31685146 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02789 6 216 C3H Transcription Factor Family AT4G27470 38.739 4.85e-46 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02789 K10666 - gmx:100816864 365.54