Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02760 ATGTCTCTCCCTGATTCTCCTGTGCCCGATAATATCGAGACCGATCCTTCTGAAGACGAGGAAGAAGTCGAAGAAGAAATAGAGGAGGAGGAAGCTGAAGAAGAAGTGGAAGAAGAGGAGATTGAGGAAGAAGTAGAAGAGGAAGATGTTGAAGAAGAGGTAGAGGAGGAAGAGGTTGAGGAAGTATATGAGGAAGAAGTGGAGGAGGAAGAGGTCGAGGAAGTAGAGGAGGAAGAGGAAGTGGAAGAGATGGAGTTAGAAGAAGAGGAAGAGGAAGAACAAGAAGTAGAGGAAGTGGAAGTAGAAGAAGAAGAAATAGAGGGAGAAGAAGTAGAAGAAGAAGAAGAAGAAGTAGAAGTTGAGGTAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGGGAGAACAAGAAGTAGAAGAAGGGGAGGAAGAAGTCCAAGAGGAGGAAGGAGAAGAAGAGAAACAAGAACAAGCAGTGGAGAATAAGAAAGAAGAGCAACAACAGCAACAAAGAGAAGCAGTGGAGGAGAAGAAGGAAGAGCACCCACAACAACAAGAAAAAGTAACGAAGGAGAAGAAGGAAGAGCAACGACAGCAACCAGAAGAAGCAGTGGAGGAGAAGAAGAAAGAGCAAGAACAGCAACAAGAAGAAGCTGTGGAGGAGAAGAAGAAAGAGCAACAATTGCAACAAGAAGCAATGAAAGAGAAGGAGGGACAACAAAAAGGAGTAGAAGCAGTGGGGGAGGACAGATTGGCGTTGACAGGTTCTCCACCCGATGCTGATGAGGGTCCGAAAGATTTGAGCGTACATATGGAGTCTAAGGAGCAAGACAAAAACTTGGGGCCAGATTATTCTGTGGCTGAAAACCCTGAAGTAATTCCACCATCTAGTGTGCATTGCATGGAAGAGAATGATGCCATGCTCAAAATATCTGTTCCTTCATGTGAGATACTGACATCGAAAAAGGAAGAGCTTCACCTGAAGTATGACATTTCAAGTCATTCGAAGTCAACAGAAAATCTGACTAATGTTGAAAATTGTAGAAGTCAAGGACTAGAAGTTGACGGTGAAAATGCTGGATCCCTTCTGCAGAAGGAAACACAAGATGGATACAGTGAGTTAGGTTGCAATAGCAAGGCTAGTTTATGTCATGATAATGATATTAATTCCAGGGTCAGGGACACCAAGTCATCTAGTGTCACTGGACAAGATATGGTCATTGGCCTCCTTCCAAAAGATTGTATTGTTGAGGATGCTAGTGGTGATCAGAATTCTAGGAACAATATCAAGCAGTTAGAGATGGAGTCAAGGGATGATATGAAGCAAACACTATCAAGGACTAGAAGTATGTCTCCGAGTGCTGAGATTAAGAACAGAAACAAACGACCAAAAATTATATGTGACTTTTTTGCTAAGGGATGGTGTATCAGAGGTAGTTCTTGTAGCTTTCTTCATACAATAGATACTGTGGATAAGACAGATCAGGAGGCTGAAGCTGACTTAGTTACTACTCATCAGAAGAGAAAATTGAAAGTGGAAGAAGGTGTTAGGGAAAATGTTCAGAGAATAAGGATGAATGAGCAGGAACAAACTCCTAGTTGGCATCCATCTCAAGAAAAACAGAACTTTACGCCGAGGGACAACTTGTTTCCAGAGAATAGATTTGCATTTAGTTCAACAAGCAATTGTTTCAATCCAAAGCAGGATGGAATGGCTACTCTTCGGAACCAACATATGTACAAAGGATATGCTTCCACTCTTCTGAGCCATTCACCAAATTCAAGCCTGGTTACTCAATTTCCAGCTTCAAGTATGTCACTCTCTCAGCGGATTTCTTCTCAATCAGCATGTTCATTGCCTTTTAGTTCATCTCTGGGGGCTGGTAATCTGAACGCTCAAACGCTCACATCTAAGTCCACTTTCTCTGGTTCAGGGCGGGAAGATTTTCCTCTGGTTAGTTCTTCCAGCGTTCCATCTTATCCCACTGGATATAAATCAAAAATCTGTTCTTATGATTGGGAACCTTCTGTACCCTTCCGGCCATCCTTTTTTATTACTCCCATGAATGTATCATCTCCTGCAGATCTTTACGACCCTCTTCGAGATAGCATAGAGATACCTAATATAGGGGATGGGTCTTTGAAGGCTTCCCTTTTAATTCAAGGATCTAACGTACTGGCTTCATCACAGGCTCCAATATATGGTGATTCTGCTGGGATTGGGAAATACACGTCCAGTGTTAATGATGACAAAAGTTCTGTATCTTCTCATAATAAATTTTATGAAAATGAGCCAAACAAAAATTCTGTTCCTCATGAAAAAGATTATCTTCCAAATGAAACAGAGATAACGTCGGGAACTTATTCAAACTATCAAAATGGTAAAATTGGCACAGGACAAAATACCTTTGACGTTGCAGATAGTACTAAAAAGGAGAGAGAAATGACTGAACATGATGCTAGACGACATGGTGAAGGATCAGGGCATAAAACAAAGAGAGGAGACAGGGATAAGAAAAATCATGAAATAGATGTTGACTTTCAGATGGATGGCAGCATGCAGAAGGAACCAAAGGCACTAAAAATGTTACGTGCAGCTCTTGTTGATCACGTAAAAGAGTTGTTAAAACCAGTTTGGCATGAGGGTCGTCTTAGCAAGGATGCACATATTATGATAGTCAGAAAATCAGTTGACAAGGTTGTTAGCACCATAGAGCCCCATCAGATTCCTACCATAGATACTGCCAAGCAATATGTTTCTTCAAGTCGGGCAAAAATTGCAAAGCTGGTCAATGGATACGTCAACAAATATGGCAAATCTTGA 2820 0.4156 MSLPDSPVPDNIETDPSEDEEEVEEEIEEEEAEEEVEEEEIEEEVEEEDVEEEVEEEEVEEVYEEEVEEEEVEEVEEEEEVEEMELEEEEEEEQEVEEVEVEEEEIEGEEVEEEEEEVEVEVEEEEEEEEEEGEQEVEEGEEEVQEEEGEEEKQEQAVENKKEEQQQQQREAVEEKKEEHPQQQEKVTKEKKEEQRQQPEEAVEEKKKEQEQQQEEAVEEKKKEQQLQQEAMKEKEGQQKGVEAVGEDRLALTGSPPDADEGPKDLSVHMESKEQDKNLGPDYSVAENPEVIPPSSVHCMEENDAMLKISVPSCEILTSKKEELHLKYDISSHSKSTENLTNVENCRSQGLEVDGENAGSLLQKETQDGYSELGCNSKASLCHDNDINSRVRDTKSSSVTGQDMVIGLLPKDCIVEDASGDQNSRNNIKQLEMESRDDMKQTLSRTRSMSPSAEIKNRNKRPKIICDFFAKGWCIRGSSCSFLHTIDTVDKTDQEAEADLVTTHQKRKLKVEEGVRENVQRIRMNEQEQTPSWHPSQEKQNFTPRDNLFPENRFAFSSTSNCFNPKQDGMATLRNQHMYKGYASTLLSHSPNSSLVTQFPASSMSLSQRISSQSACSLPFSSSLGAGNLNAQTLTSKSTFSGSGREDFPLVSSSSVPSYPTGYKSKICSYDWEPSVPFRPSFFITPMNVSSPADLYDPLRDSIEIPNIGDGSLKASLLIQGSNVLASSQAPIYGDSAGIGKYTSSVNDDKSSVSSHNKFYENEPNKNSVPHEKDYLPNETEITSGTYSNYQNGKIGTGQNTFDVADSTKKEREMTEHDARRHGEGSGHKTKRGDRDKKNHEIDVDFQMDGSMQKEPKALKMLRAALVDHVKELLKPVWHEGRLSKDAHIMIVRKSVDKVVSTIEPHQIPTIDTAKQYVSSSRAKIAKLVNGYVNKYGKS 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02760 939 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 77 938 - -
Viun6g02760 939 Gene3D - 452 541 - -
Viun6g02760 939 MobiDBLite consensus disorder prediction 745 764 - -
Viun6g02760 939 MobiDBLite consensus disorder prediction 12 153 - -
Viun6g02760 939 MobiDBLite consensus disorder prediction 745 840 - -
Viun6g02760 939 MobiDBLite consensus disorder prediction 779 804 - -
Viun6g02760 939 SUPERFAMILY CCCH zinc finger 460 485 IPR036855 GO:0046872
Viun6g02760 939 MobiDBLite consensus disorder prediction 1 268 - -
Viun6g02760 939 MobiDBLite consensus disorder prediction 154 243 - -
Viun6g02760 939 MobiDBLite consensus disorder prediction 805 840 - -
Viun6g02760 939 SMART c3hfinal6 461 486 IPR000571 GO:0046872
Viun6g02760 939 MobiDBLite consensus disorder prediction 434 455 - -
Viun6g02760 939 ProSiteProfiles Zinc finger C3H1-type profile. 460 487 IPR000571 GO:0046872
Viun6g02760 939 Coils Coil 17 238 - -
Viun6g02760 939 Pfam Torus domain 437 499 IPR032297 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02760 Viun-Chr6 31428450 31436987 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun6g02760 Torus 1.4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02760 - - vra:106775763 1258.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02760 6 31428450 31436987 Viun6g02760 6 31428450 31436987 ECH