Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02759 ATGTCTCTCCCTGATTCTCCTGTGCCCGATAATATCGAGACCGATCCTTCTGAAGACGAGGAAGAAGTCGAAGAAGAAATAGAGGAGGAGGAAGCTGAAGAAGAAGTGGAAGAAGAGGAGATTGAGGAAGAAGTAGAAGAGGAAGATGTTGAAGAAGAGGTAGAGGAGGAAGAGGTTGAGGAAGTATATGAGGAAGAAGTGGAGGAGGAAGAGGTCGAGGAAGTAGAGGAGGAAGAGGAAGTGGAAGAGATGGAGTTAGAAGAAGAGGAAGAGGAAGAACAAGAAGTAGAGGAAGTGGAAGTAGAAGAAGAAGAAATAGAGGGAGAAGAAGTAGAAGAAGAAGAAGAAGAAGTAGAAGTTGAGGTAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGGGAGAACAAGAAGTAGAAGAAGGGGAGGAAGAAGTCCAAGAGGAGGAAGGAGAAGAAGAGAAACAAGAACAAGCAGTGGAGAATAAGAAAGAAGAGCAACAACAGCAACAAAGAGAAGCAGTGGAGGAGAAGAAGGAAGAGCACCCACAACAACAAGAAAAAGTAACGAAGGAGAAGAAGGAAGAGCAACGACAGCAACCAGAAGAAGCAGTGGAGGAGAAGAAGAAAGAGCAAGAACAGCAACAAGAAGAAGCTGTGGAGGAGAAGAAGAAAGAGCAACAATTGCAACAAGAAGCAATGAAAGAGAAGGAGGGACAACAAAAAGGAGTAGAAGCAGTGGGGGAGGACAGATTGGCGTTGACAGGTTCTCCACCCGATGCTGATGAGGGTCCGAAAGATTTGAGCGTACATATGGAGTCTAAGGAGCAAGACAAAAACTTGGGGCCAGATTATTCTGTGGCTGAAAACCCTGAAGTAATTCCACCATCTAGTGTGCATTGCATGGAAGAGAATGATGCCATGCTCAAAATATCTGTTCCTTCATGTGAGATACTGACATCGAAAAAGGAAGAGCTTCACCTGAAGTATGACATTTCAAGTCATTCGAAGTCAACAGAAAATCTGACTAATGTTGAAAATTGTAGAAGTCAAGGACTAGAAGTTGACGGTGAAAATGCTGGATCCCTTCTGCAGAAGGAAACACAAGATGGATACAGTGAGTTAGGTTGCAATAGCAAGGCTAGTTTATGTCATGATAATGATATTAATTCCAGGGTCAGGGACACCAAGTCATCTAGTGTCACTGGACAAGATATGGTCATTGGCCTCCTTCCAAAAGATTGTATTGTTGAGGATGCTAGTGGTGATCAGAATTCTAGGAACAATATCAAGCAGTTAGAGATGGAGTCAAGGGATGATATGAAGCAAACACTATCAAGCAGGACTAGAAGTATGTCTCCGAGTGCTGAGATTAAGAACAGAAACAAACGACCAAAAATTATATGTGACTTTTTTGCTAAGGGATGGTGTATCAGAGGTAGTTCTTGTAGCTTTCTTCATACAATAGATACTGTGGATAAGACAGATCAGGAGGCTGAAGCTGACTTAGTTACTACTCATCAGAAGAGAAAATTGAAAGTGGAAGAAGGTGTTAGGGAAAATGTTCAGAGAATAAGGATGAATGAGCAGGAACAAACTCCTAGTTGGCATCCATCTCAAGAAAAACAGAACTTTACGCCGAGGGACAACTTGTTTCCAGAGAATAGATTTGCATTTAGTTCAACAAGCAATTGTTTCAATCCAAAGCAGGATGGAATGGCTACTCTTCGGAACCAACATATGTACAAAGGATATGCTTCCACTCTTCTGAGCCATTCACCAAATTCAAGCCTGGTTACTCAATTTCCAGCTTCAAGTATGTCACTCTCTCAGCGGATTTCTTCTCAATCAGCATGTTCATTGCCTTTTAGTTCATCTCTGGGGGCTGGTAATCTGAACGCTCAAACGCTCACATCTAAGTCCACTTTCTCTGGTTCAGGGCGGGAAGATTTTCCTCTGGTTAGTTCTTCCAGCGTTCCATCTTATCCCACTGGATATAAATCAAAAATCTGTTCTTATGATTGGGAACCTTCTGTACCCTTCCGGCCATCCTTTTTTATTACTCCCATGAATGTATCATCTCCTGCAGATCTTTACGACCCTCTTCGAGATAGCATAGAGATACCTAATATAGGGGATGGGTCTTTGAAGGCTTCCCTTTTAATTCAAGGATCTAACGTACTGGCTTCATCACAGGCTCCAATATATGGTGATTCTGCTGGGATTGGGAAATACACGTCCAGTGTTAATGATGACAAAAGTTCTGTATCTTCTCATAATAAATTTTATGAAAATGAGCCAAACAAAAATTCTGTTCCTCATGAAAAAGATTATCTTCCAAATGAAACAGAGATAACGTCGGGAACTTATTCAAACTATCAAAATGGTAAAATTGGCACAGGACAAAATACCTTTGACGTTGCAGATAGTACTAAAAAGGAGAGAGAAATGACTGAACATGATGCTAGACGACATGGTGAAGGATCAGGGCATAAAACAAAGAGAGGAGACAGGGATAAGAAAAATCATGAAATAGATGTTGACTTTCAGATGGATGGCAGCATGCAGAAGGAACCAAAGGCACTAAAAATGTTACGTGCAGCTCTTGTTGATCACGTAAAAGAGTTGTTAAAACCAGTTTGGCATGAGGGTCGTCTTAGCAAGGATGCACATATTATGATAGTCAGAAAATCAGTTGACAAGGTTGTTAGCACCATAGAGCCCCATCAGATTCCTACCATAGATACTGCCAAGCAATATGTTTCTTCAAGTCGGGCAAAAATTGCAAAGCTGGTCAATGGATACGTCAACAAATATGGCAAATCTTGA 2823 0.4159 MSLPDSPVPDNIETDPSEDEEEVEEEIEEEEAEEEVEEEEIEEEVEEEDVEEEVEEEEVEEVYEEEVEEEEVEEVEEEEEVEEMELEEEEEEEQEVEEVEVEEEEIEGEEVEEEEEEVEVEVEEEEEEEEEEGEQEVEEGEEEVQEEEGEEEKQEQAVENKKEEQQQQQREAVEEKKEEHPQQQEKVTKEKKEEQRQQPEEAVEEKKKEQEQQQEEAVEEKKKEQQLQQEAMKEKEGQQKGVEAVGEDRLALTGSPPDADEGPKDLSVHMESKEQDKNLGPDYSVAENPEVIPPSSVHCMEENDAMLKISVPSCEILTSKKEELHLKYDISSHSKSTENLTNVENCRSQGLEVDGENAGSLLQKETQDGYSELGCNSKASLCHDNDINSRVRDTKSSSVTGQDMVIGLLPKDCIVEDASGDQNSRNNIKQLEMESRDDMKQTLSSRTRSMSPSAEIKNRNKRPKIICDFFAKGWCIRGSSCSFLHTIDTVDKTDQEAEADLVTTHQKRKLKVEEGVRENVQRIRMNEQEQTPSWHPSQEKQNFTPRDNLFPENRFAFSSTSNCFNPKQDGMATLRNQHMYKGYASTLLSHSPNSSLVTQFPASSMSLSQRISSQSACSLPFSSSLGAGNLNAQTLTSKSTFSGSGREDFPLVSSSSVPSYPTGYKSKICSYDWEPSVPFRPSFFITPMNVSSPADLYDPLRDSIEIPNIGDGSLKASLLIQGSNVLASSQAPIYGDSAGIGKYTSSVNDDKSSVSSHNKFYENEPNKNSVPHEKDYLPNETEITSGTYSNYQNGKIGTGQNTFDVADSTKKEREMTEHDARRHGEGSGHKTKRGDRDKKNHEIDVDFQMDGSMQKEPKALKMLRAALVDHVKELLKPVWHEGRLSKDAHIMIVRKSVDKVVSTIEPHQIPTIDTAKQYVSSSRAKIAKLVNGYVNKYGKS 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02759 940 MobiDBLite consensus disorder prediction 1 266 - -
Viun6g02759 940 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 77 939 - -
Viun6g02759 940 MobiDBLite consensus disorder prediction 12 153 - -
Viun6g02759 940 SMART c3hfinal6 462 487 IPR000571 GO:0046872
Viun6g02759 940 Pfam Torus domain 439 500 IPR032297 -
Viun6g02759 940 SUPERFAMILY CCCH zinc finger 461 486 IPR036855 GO:0046872
Viun6g02759 940 MobiDBLite consensus disorder prediction 746 765 - -
Viun6g02759 940 MobiDBLite consensus disorder prediction 746 841 - -
Viun6g02759 940 MobiDBLite consensus disorder prediction 780 805 - -
Viun6g02759 940 ProSiteProfiles Zinc finger C3H1-type profile. 461 488 IPR000571 GO:0046872
Viun6g02759 940 MobiDBLite consensus disorder prediction 154 243 - -
Viun6g02759 940 MobiDBLite consensus disorder prediction 419 456 - -
Viun6g02759 940 Gene3D - 453 542 - -
Viun6g02759 940 Coils Coil 17 238 - -
Viun6g02759 940 MobiDBLite consensus disorder prediction 806 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02759 Viun-Chr6 31428450 31436987 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun6g02759 Torus 1.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02759 - - vra:106775763 1254.2