Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02754 ATGGCGCCCAGGGACAAGACCACTGCCGTTAAGGTTAACACTAACGCTAACGCCGCCGCAGCCGCCGGGGTCAAGGAGGTGCATTTTCGGGGAGTCAGGAAGAGGCCATGGGGGAGATACGCCGCCGAGATCAGAGATCCCGGCAAGAAGAGCCGCGTTTGGCTGGGCACCTTCGACACGGCGGAGGAGGCGGCGCGTGCCTACGACGCCGCCGCTCGGGAGTTTCGCGGCCCCAAGGCCAAAACCAATTTCCCTCCTCCATCCGATAGTAACGTCAAGAACGCCAGCCCTAGCCAGAGTAGCACCGTCGAGTCCTCCAGCCGCGACCGCGATGTCGCCGCCGATTCCTCCCCGCTTGATCTCAACCTCGCCCCGGCCGCCGTATCCGCTGCCCGCTTCCCCTTCCAGCACCAGTTCCCCGTTTTCCCGGCGGCGGCGGCCAACCAGGTTTTGTACTTCGACGCTGTCATACGCGCCGGTTTGGGCGGCCCGCGTGGGTTTGGGTTCGGCTACAATCAGCATCCCGTTGCGGCGAGCGAGTTCCACGCGACGACGAGCGACTCCGACTCGTCCTCCGTGATCGATCTGAACCACAGCGAAGGCGATGTGAAGGGGAGCGGTTCCAGGATTTTCGATCTCGACCTTAATAACCCTCCCCCACAGGAGATGGCCTGA 675 0.6356 MAPRDKTTAVKVNTNANAAAAAGVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGPKAKTNFPPPSDSNVKNASPSQSSTVESSSRDRDVAADSSPLDLNLAPAAVSAARFPFQHQFPVFPAAAANQVLYFDAVIRAGLGGPRGFGFGYNQHPVAASEFHATTSDSDSSSVIDLNHSEGDVKGSGSRIFDLDLNNPPPQEMA 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02754 224 FunFam Ethylene-responsive transcription factor 2 27 86 - -
Viun6g02754 224 MobiDBLite consensus disorder prediction 84 107 - -
Viun6g02754 224 SUPERFAMILY DNA-binding domain 28 85 IPR016177 GO:0003677
Viun6g02754 224 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Viun6g02754 224 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 191 - -
Viun6g02754 224 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Viun6g02754 224 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700|GO:0006355
Viun6g02754 224 MobiDBLite consensus disorder prediction 75 115 - -
Viun6g02754 224 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Viun6g02754 224 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Viun6g02754 224 MobiDBLite consensus disorder prediction 186 224 - -
Viun6g02754 224 CDD AP2 28 85 IPR001471 GO:0003700|GO:0006355
Viun6g02754 224 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02754 Viun-Chr6 31398827 31399937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02754 25 107 AP2-EREBP Transcription Factor Family AT5G44210 75.904 2.54e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun6g02754 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02754 K09286 - gmx:100170742 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02754 6 31398827 31399937 Viun6g02754 6 31398827 31399937 ECH
Viun5g02579 5 36906842 36907895 Viun6g02754 6 31398827 31399937 ECH