Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02732 ATGGGGTTGATCGATCTGAACACCACCGAGGATGATGAAGCTCCATTATCTGCTTCTTCTTCTTCTGCTGCTTCGTCTTCTTCTTCTCACTCGGGGATAAGCACTTCTGCTTCAACCCTCGTTGGTCCTCCTCCTCCTCCGCCTCCTCCTCCTTCTTCCGTCTGCTTGGAACTGTGGCACGCGTGTGCGGGTCCTTTGATCTCTCTGCCCAAGAAAGGAAGTGTTGTTGTGTACTTGCCACAGGGACACTTTGAGCATGTTCAGGATTTTCCGGTCACTGCTTATGATATCCCACCCCATGTGTTCTGTCGTGTTCTTGATGTCAAGCTCCATGCAGAGGAAGGGAGCGATGAAGTATATTGCCAAGTGTTGTTGGTTCCTGAAAGTGAGCAAGTGGAGCAAAGTTTGCGTGAAGGCGAAATTGAAGCTGACGGGGAAGAGGAGGACACTGAAGCTATGGTGAAGTCAACAACTCCCCATATGTTCTGCAAGACTCTCACAGCTTCAGACACCAGCACTCATGGTGGATTTTCAGTGCCTCGCCGAGCGGCTGAAGATTGCTTTCCTCCTCTGGATTACAGTCAACAGAGACCTTCACAGGAGCTCGTGGCTAAGGATCTTCATGGCCTGGAATGGAGGTTTCGTCATATATACAGGGGCCAGCCACGCAGGCATTTGCTAACTACTGGGTGGAGTGCATTTGTGAACAAAAAGAAGCTTGTTTCTGGAGATGCTGTGTTGTTTCTTAGGGGCGACGATGGAGAACTGAGATTAGGGATTCGTAGGGCAGCCCAGTTGAAAGGTTCTGGTTCCTTTGCAGTTCCTACTGGTCAGCAGTTGAATCCTGGAACTTTCATGGATGTTGTTAATGCATTATCTGCAAGATGTGCTTTTAGTGTTTGCTACAATCCAAGGTTTAGCTCTTCAGAATTCATCATACCTGTTCACAAATTCTTAAAGAGTCTTGATTGTTCTTATTTAGTTGGAATGAGGTTCAGGATGCGTTTTGAAACCGAAGATGCTGCAGAGCGGAGATTTACTGGATTAATTGCTGGAATCAGTGATGTTGATCCTGTCAGATGGCCTGGATCAAAATGGAGATGCCTACTGGTAAGGTGGGATGACATGGAAGCTGCTAGGCACAATAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCAAGTTCCAGCAACATGATGGCAGCTGGTTTGAAGAGGACCAGGATTGGAATGACTTCAACGAAGATGGAATTTCCTTCTCCCACAGATGGGATTGGAACATCAGACTTTGGGGAATCATTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATCCTCCCTTTGATGGTGTTAATGCTCAGACTCCTCGGTTATACGACTTAGGGAGGTACTATATAGGTCCAAACTGTCCTGGGATTCCTCCAACAGGAAATAACATCAGGATGCCGCATGCAGCATCTGATTTTTCCTGCAATGGCACAGGCTTTAGTGAATCTTTCCGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGCCAACCATATGGAAGAGCACTGTCAATAGAGGAGGCTCGAGCTAATGGTCGCTTTGGACATTTTGATGGTTATCAGTTGCTTAACTCCAGAAATGGGTGGTCTGTGCAGATGCATGACAATGCTCCGCATTTGCATGCATCTGTTACACCTTCACAGGTGTCATCTCCATCATCCGTGTTAATGTTCCAGCAAGCAGTTAATCCAGTTTCTAACAGTGATTATAATACTAAGAAACATAGTAAGATGTACCAAGGTTTATGTGCATCTGAAGTGAAAGCTAGAACATTTGCATCTCCCCCATCTGATGATCTTGCTTTCTCTAGGCGAGCTCCAGAAAGGGCTAGTTCTTTAGGTATGTTTGATGTTCGTAATCGGCTGGGGAGTTCACAGTCACACAATTCTGTGTCAGCATTGAGAAACAATCAAGAGTTGGTTTCCTCATGTAAAAGTAGTTGTAGACTCTTTGGTTTTTCATTGACTGAGGACACACATGTTGCAACCAAAGAGGTTGATGCCTCTACCATCACTTTACCAATGAATGCTGGACCTTCCTTTACTAGAATTGTTGAAGATGAGTTTCATCCCAGCAGGGCACTGCAGAGCAAGGCGGTTGGAAGTAACTGCACAAAGGGTGTGTTGCAGTATTGA 2208 0.4597 MGLIDLNTTEDDEAPLSASSSSAASSSSSHSGISTSASTLVGPPPPPPPPPSSVCLELWHACAGPLISLPKKGSVVVYLPQGHFEHVQDFPVTAYDIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEQSLREGEIEADGEEEDTEAMVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGIRRAAQLKGSGSFAVPTGQQLNPGTFMDVVNALSARCAFSVCYNPRFSSSEFIIPVHKFLKSLDCSYLVGMRFRMRFETEDAAERRFTGLIAGISDVDPVRWPGSKWRCLLVRWDDMEAARHNRVSPWEIEPSGSASSSSNMMAAGLKRTRIGMTSTKMEFPSPTDGIGTSDFGESLRFRKVLQGQEILGVNPPFDGVNAQTPRLYDLGRYYIGPNCPGIPPTGNNIRMPHAASDFSCNGTGFSESFRFQKVLQGQEILPSQPYGRALSIEEARANGRFGHFDGYQLLNSRNGWSVQMHDNAPHLHASVTPSQVSSPSSVLMFQQAVNPVSNSDYNTKKHSKMYQGLCASEVKARTFASPPSDDLAFSRRAPERASSLGMFDVRNRLGSSQSHNSVSALRNNQELVSSCKSSCRLFGFSLTEDTHVATKEVDASTITLPMNAGPSFTRIVEDEFHPSRALQSKAVGSNCTKGVLQY 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02732 735 SUPERFAMILY DNA-binding pseudobarrel domain 155 269 IPR015300 -
Viun6g02732 735 FunFam Auxin response factor 160 264 - -
Viun6g02732 735 SMART B3_2 162 264 IPR003340 GO:0003677
Viun6g02732 735 MobiDBLite consensus disorder prediction 1 52 - -
Viun6g02732 735 Gene3D - 326 399 - -
Viun6g02732 735 FunFam Auxin response factor 325 396 - -
Viun6g02732 735 Gene3D - 160 264 IPR015300 -
Viun6g02732 735 MobiDBLite consensus disorder prediction 12 39 - -
Viun6g02732 735 Pfam B3 DNA binding domain 162 263 IPR003340 GO:0003677
Viun6g02732 735 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 53 688 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun6g02732 735 CDD B3_DNA 160 262 IPR003340 GO:0003677
Viun6g02732 735 ProSiteProfiles B3 DNA-binding domain profile. 162 264 IPR003340 GO:0003677
Viun6g02732 735 Pfam Auxin response factor 289 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02732 Viun-Chr6 31229984 31236120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02732 161 520 B3 DNA Binding Superfamily AT2G33860 59.834 1.58e-144 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun6g02732 B3 3.6e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02732 K14486 - gmx:100789906 1236.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02732 6 31229984 31236120 Viun6g02732 6 31229984 31236120 ECH