Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02713 ATGGCTTCTTCTAATAGACACTGGCCGAGCATGTTCAAGTCTAAGCCCTGCAACCCTCACCACCAATGGCAGCATGACATCAACCCCTCCCTCATCTCAACTGGTTGCCACAGAAGCCCTTACACTTCAGGTACGGGTTGTGAAGAGAGAAGTCCGGAGCCAAAGCCAAGGTGGAATCCAAAACCTGAGCAAATTCGCATTCTGGAAGCTATATTCAACTCAGGAATGGTGAATCCTCCGAGGGATGAGATAAGAAAGATAAGGGCACAGTTACAAGAGTATGGCCAAGTGGGTGATGCAAACGTATTCTATTGGTTTCAGAACCGCAAATCAAGGAGCAAACACAAGCTTCGCCATCTCCAAAACTCCAAGAACCAGAACCTTGAAGCTCAACAAAACCCCACTTCTCTCCCCCAGATCACTGCACCATCATCCTCATCTTCCTCCTCTGAGAAATCCTCTCCAAAAGAATTAATACCCACCAAGGTATTCTCCATCGGATTCTCTAACGTCACCGATGTGGTACCTAATTCTCCAACTACTTCTGTGAACCAGACCTATTTTCAGACTCACCACGAGTCTTCTATGCTTCCACCCCCACCACCTGCTGCTGCCGCCGCACAAACCGGGGGTTTCTTCTTCCCAGTGCAACATCATGGGCAGGGAATACCACCTAGTACGGTTGCATCACAAGGGTTTTGTTTCTCGGAGCTGTCCAATGTTGTTCAACTTCAATCGCCTCCTCAACACAACGTTGGTCCTTGCACCAGTCTCTTGCTGAGTGAGATCGTAGGCCATGGTGCTGCTGCTTCAAAGAAAGATCTGGAGCAAGACAAGAGTCTGAAAATAATGCACCAGCCCTCACTGTTTAATTTCTGTGTCACTCCCACAACAACAGCTCCTACTACTCCCTCTGCCATACCTCCCATCACTACCTCATCCACCACTGTTCTATCCCCCGTCATTGCTCAAGTTCAAGGCATGGGAGATCCAACTGCTGCGGCGAGATCAACGGTGTTCATTAACGATGTGGCATTCGAGGTAGCGGTGGGACCTTTCAATGTGCGTGAAGCTTTTGGAGATGATGCTGTGCTCATCCACGCCACTGGTCAACCTGTGCTAACAAACCAATGGGGTGTCACTCTTCATTCACTCCAGCATGGTGCATGTTATTATTTGATATAG 1185 0.4869 MASSNRHWPSMFKSKPCNPHHQWQHDINPSLISTGCHRSPYTSGTGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNSKNQNLEAQQNPTSLPQITAPSSSSSSSEKSSPKELIPTKVFSIGFSNVTDVVPNSPTTSVNQTYFQTHHESSMLPPPPPAAAAAQTGGFFFPVQHHGQGIPPSTVASQGFCFSELSNVVQLQSPPQHNVGPCTSLLLSEIVGHGAAASKKDLEQDKSLKIMHQPSLFNFCVTPTTTAPTTPSAIPPITTSSTTVLSPVIAQVQGMGDPTAAARSTVFINDVAFEVAVGPFNVREAFGDDAVLIHATGQPVLTNQWGVTLHSLQHGACYYLI 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02713 394 SMART HOX_1 53 120 IPR001356 GO:0003677
Viun6g02713 394 Pfam Homeodomain 55 115 IPR001356 GO:0003677
Viun6g02713 394 CDD homeodomain 54 116 IPR001356 GO:0003677
Viun6g02713 394 Gene3D - 55 121 - -
Viun6g02713 394 MobiDBLite consensus disorder prediction 34 62 - -
Viun6g02713 394 SUPERFAMILY Homeodomain-like 51 119 IPR009057 -
Viun6g02713 394 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Viun6g02713 394 FunFam WUSCHEL-related homeobox 11 55 122 - -
Viun6g02713 394 MobiDBLite consensus disorder prediction 125 156 - -
Viun6g02713 394 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 394 IPR044557 GO:0003700|GO:0050793
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02713 Viun-Chr6 31142700 31145300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02713 1 394 Wox Gene Family AT2G33880 47.307 2.99e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Viun6g02713 Homeodomain 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02713 - - pvu:PHAVU_006G179900g 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02713 6 31142700 31145300 Viun6g02713 6 31142700 31145300 ECH