Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02712 ATGGGAAGCAACAAAAGCCACGAGGAACAACAAAGCAGCCAAACAGAGTTCTTACCCTTCAACGAGAACGACCCTCAGGACATGGTCATATACCAAGTCCTCAACGAGGCCAATGCTCTCTCCAACACATTCCACCCTCACCAAAGACTCCACCAACCGCAATTGGGCCTCGAGCCCACCAGAAACATCGCCAAAAAACACTACAGAGGAGTTCGCCGCCGACCCTGGGGGAAGTACGCCGCCGAGATTCGGGACTCCGCACGCCACGGCGCCAGAATATGGCTCGGCACGTTCCAGACCGCCGAAGAGGCCGCCATGGCTTACGACCGCGCCGCCTTCAAGATGAGAGGCGCCAAGGCTTTGCTCAATTTCCCAGCCGAAATTGTGGCTGCGGCCTCCGACTCATCTTTGAACAACATTAATAACAACGATGCTGTTTCTGATTCTAGTGCTGGAAGCTCTTGCACAACGAATAATTCCACCCAGGTAAATGGGTCTCGGTCAGAAAGCACGAGTAGCACTAGTTAG 528 0.5398 MGSNKSHEEQQSSQTEFLPFNENDPQDMVIYQVLNEANALSNTFHPHQRLHQPQLGLEPTRNIAKKHYRGVRRRPWGKYAAEIRDSARHGARIWLGTFQTAEEAAMAYDRAAFKMRGAKALLNFPAEIVAAASDSSLNNINNNDAVSDSSAGSSCTTNNSTQVNGSRSESTSSTS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02712 175 Gene3D AP2/ERF domain 66 127 IPR036955 GO:0003700|GO:0006355
Viun6g02712 175 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Viun6g02712 175 PRINTS Ethylene responsive element binding protein signature 91 107 IPR001471 GO:0003700|GO:0006355
Viun6g02712 175 MobiDBLite consensus disorder prediction 1 21 - -
Viun6g02712 175 MobiDBLite consensus disorder prediction 137 175 - -
Viun6g02712 175 SUPERFAMILY DNA-binding domain 67 127 IPR016177 GO:0003677
Viun6g02712 175 SMART rav1_2 67 131 IPR001471 GO:0003700|GO:0006355
Viun6g02712 175 PANTHER DNA-BINDING DOMAIN 28 166 IPR044808 GO:0003700|GO:0009873
Viun6g02712 175 ProSiteProfiles AP2/ERF domain profile. 67 125 IPR001471 GO:0003700|GO:0006355
Viun6g02712 175 CDD AP2 66 126 IPR001471 GO:0003700|GO:0006355
Viun6g02712 175 FunFam Ethylene-responsive transcription factor 2 66 127 - -
Viun6g02712 175 Pfam AP2 domain 67 117 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02712 Viun-Chr6 31130963 31131900 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02712 18 134 AP2-EREBP Transcription Factor Family AT5G47220 47.059 2.09e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun6g02712 AP2 5.6e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02712 6 31130963 31131900 Viun6g02712 6 31130963 31131900 ECH