Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02707 ATGGACATTGCAGCTCGAAGTTACAATACCACTTCAAAGACCTACAAGTTGGCTCTCTATTTTCGGAACTCCTCCGAGGATCCCCTTAGAGCTATCACTCTTGCTGAAGAGATGATTGATAAGCAAAAGGTGCAAGTGATTATTGGGATGCACAGATGGTCAGAAGCAGCTCTAGTGGCTAAAATAGGAAGCCGAGCTCAAGTTCCTATCATAGCATTTGCAGAACCCACCATTACACCGACCTTGATGACTAATCGGTGGCCTTTTTTGGTGAGAATGACTAAGAGTGGTTTATCATATATCAAATGCATTGCAGATATAGTGAAAGCTTTTGGTTGGCAGAGAGTAGTAGCTATCTATGAAGATGATGCATATGGAGGTGATTATGGCATGCTAGCACTGTTATCTGAGGCCCTCCGGGATGTGAGTTCATCGATTGATTATCACTTAGTTCTTCCACCTATTTCTTCTCTGCATGAACCAGGAGGGTTTATACGTGAAAAGCTGAAGTTGTTGCAAACCCAATCTCGCGTTTTCATTGTGCTGCAATCTTCATTAGAAATGGCTATCCATTTGTTTAAAGAAGCCTCAAAAATGGGACTCGTGGACAAAGAATCAGTTTGGATACTTCCAGAGAGCATAACAAATGTGCTGGACTCTGTCAACAAGTCTGCTATTTTCTATATGGATGGAGCTTTAGGAATCAAAACGTACTACTCCGAAATAAGCACCGAGTACCAACATTTTGAGGCTGAATTCCGGAGAACATTTTGGTCCAAGAATGTCGAGGAAGATAACCGCGACCCGGGATTTTATGCATCGCAAGCATATGATAGCATTAAAATTGTGACCCAGGCAGTGGACAGAATGACCAGTAGAAACACTAGGAGCCCAAAGAATTTACTTGGAGAAATACTGCGTAGCAGTTTTCTTGGTTTAAGCGGTCATATTCAGTTTGAAGATGGGAAACTCCAGCAGACTTCTATTTTAAGGATGGTAAATGTGGCCGGGAAGAGTTACAAAGAACTATGCTTTTGGAGTGAACAATATGGGTTCACCAAAAACCTCCCTACAGGAAAAGATGGACATTCTGGTGCTGGTAATACAGAATGTTTCAGTGTTGTTCGGTGGCCTGGGAATCTGAAAAGGGATCCAAAAGGCTGGAATATGCCTACTCAACAAAATCCAATGAAAATTGCAGTCCGAAGCAGAACCTCTTTTTCCAAGTTTGTCAAGGTTGATTATTATCATAAGGGTGATCCTGCAACATATAGTGGATTTTGTATCGATATTTTTGAGAGTGTGCACGACCTTTTGGGGTATGACTTGCCATACAAGTATTATCCTATTGATGGAACCTATAATGATTTGGTTCAGCTTGTCTATAACAAGAGTTACGATGCCGTAGTTGGGGACATGACCATACTAGAAGAAAGAATGCAGTATGTGGATTTTACAGTGCCATATGCAGAATCAGGATTGACAATGGTAGTTCCATCAAAGTCTAAAGACTCAGCATGGATGTTCACAAAGCCCTTTACCTGGGAACTGTGGATGGTTACAGGTGCCCTTTTGATTTACACAATGTTAGCAGTTTGGTACCTTGAGAGAGAATCCAATCCTGAGTTTCATGGCAATTGGGGGAGCCAAATCAGCACCGCTCTTTGGTTTACTTTCTCCTCTTTGTTTTTCGCTCATAGGGAAAAAATGCATAGCAACTTAACTCGCATGGTGCTGGTCTCATGGCTCTTGCTAGTGCTGATCCTTAACTCCAGCTACACTGCTAGCCTTTCTTCAATGCTCACGGTTAAAAAACTGGAACTGAATGTCACAGATATTCAGTGGTTGAAGAGGAACAACATGACAATTGGTTGCGATGGTGACTCATTTGTTAGGTCGTTCCTAGAGAAAGTAGAAGGGTTGCCGCCAGGGAACATAATAAATATCACTGATGAATACACGTATGATGATTTTTTTCAAAATAACAGCATAGCAGCTGCCTTTCTTGAACTCCCATACGAAAAGGTATTCATTACTGAATACTGCAACAGATACACCGGTTCCACTCCCAGAACCAGATTTGGAGGACTGGGCTTTATGTTCCAGAAAGGGTCGCCAGTGGCCAGAGACGTGTCAAAAGCTATATTACATCTGTCAGAAAAGGCAGAGCTGAAGAGGTTGGAAGAGAAGTGGATGATTAGCTCCAGCAAGTGCTCCAACACGACCTCCGACACCAGCAATACAGAAAGTTTGAAGCTGAGAAGTTTGTGGATTTTATATGTCATCTCTGGGGCTACTTCCACCATTTGTGTGCTACTATCAACCATCCAGTGTCTGGTAAAATCCTGTCAGCAATGCCAACGCGTAGCACCAGAAGGCAATGACACCCCAAATGATCAAAATGCGTGGGAAAAGGTGATTGCACATGTAAAGCACATCTTTAACAAAAAGATCAATAATTCAAGAGCGACACGCACACAGGTTGTGACTGATTTTCTTCCCGACAGGGTCACGAGAGCATGA 2523 0.4249 MDIAARSYNTTSKTYKLALYFRNSSEDPLRAITLAEEMIDKQKVQVIIGMHRWSEAALVAKIGSRAQVPIIAFAEPTITPTLMTNRWPFLVRMTKSGLSYIKCIADIVKAFGWQRVVAIYEDDAYGGDYGMLALLSEALRDVSSSIDYHLVLPPISSLHEPGGFIREKLKLLQTQSRVFIVLQSSLEMAIHLFKEASKMGLVDKESVWILPESITNVLDSVNKSAIFYMDGALGIKTYYSEISTEYQHFEAEFRRTFWSKNVEEDNRDPGFYASQAYDSIKIVTQAVDRMTSRNTRSPKNLLGEILRSSFLGLSGHIQFEDGKLQQTSILRMVNVAGKSYKELCFWSEQYGFTKNLPTGKDGHSGAGNTECFSVVRWPGNLKRDPKGWNMPTQQNPMKIAVRSRTSFSKFVKVDYYHKGDPATYSGFCIDIFESVHDLLGYDLPYKYYPIDGTYNDLVQLVYNKSYDAVVGDMTILEERMQYVDFTVPYAESGLTMVVPSKSKDSAWMFTKPFTWELWMVTGALLIYTMLAVWYLERESNPEFHGNWGSQISTALWFTFSSLFFAHREKMHSNLTRMVLVSWLLLVLILNSSYTASLSSMLTVKKLELNVTDIQWLKRNNMTIGCDGDSFVRSFLEKVEGLPPGNIINITDEYTYDDFFQNNSIAAAFLELPYEKVFITEYCNRYTGSTPRTRFGGLGFMFQKGSPVARDVSKAILHLSEKAELKRLEEKWMISSSKCSNTTSDTSNTESLKLRSLWILYVISGATSTICVLLSTIQCLVKSCQQCQRVAPEGNDTPNDQNAWEKVIAHVKHIFNKKINNSRATRTQVVTDFLPDRVTRA 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02707 840 PIRSF IGluLR_plant 1 833 IPR017103 -
Viun6g02707 840 Gene3D - 96 348 - -
Viun6g02707 840 SUPERFAMILY Periplasmic binding protein-like I 12 388 IPR028082 -
Viun6g02707 840 Pfam Bacterial extracellular solute-binding proteins, family 3 421 732 IPR001638 -
Viun6g02707 840 Gene3D - 398 505 - -
Viun6g02707 840 FunFam Glutamate receptor 396 507 - -
Viun6g02707 840 FunFam Glutamate receptor 506 636 - -
Viun6g02707 840 FunFam Glutamate receptor 100 267 - -
Viun6g02707 840 Gene3D - 7 327 - -
Viun6g02707 840 SMART GluR_14 398 734 IPR001320 GO:0015276|GO:0016020
Viun6g02707 840 CDD PBP1_GABAb_receptor_plant 1 356 IPR044440 -
Viun6g02707 840 SUPERFAMILY Periplasmic binding protein-like II 374 732 - -
Viun6g02707 840 Pfam Ligand-gated ion channel 733 764 IPR001320 GO:0015276|GO:0016020
Viun6g02707 840 CDD GluR_Plant 395 731 - -
Viun6g02707 840 Pfam Receptor family ligand binding region 10 325 IPR001828 -
Viun6g02707 840 Gene3D - 506 636 - -
Viun6g02707 840 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 46 802 IPR015683 -
Viun6g02707 840 Gene3D - 676 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02707 Viun-Chr6 31099893 31103684 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02707 14 773 Ion Channels AT2G29120 32.824 7.55e-136 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02707 - - gmx:100818619 1343.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02707 6 31099893 31103684 Viun6g02707 6 31099893 31103684 ECH